Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq17 123 2e-23
seq2 105 6e-18
seq7 100 3e-16
seq24 95.1 1e-14
seq21 93.3 4e-14
seq8 89.7 5e-13
>seq17
Length=90481686
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | |
Sbjct 60459949 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 60460008
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || ||||||||||| || ||||| |||| | |||||| || | ||||
Sbjct 60460009 AAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 60460068
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||| | | || | | ||| || | ||| |||
Sbjct 60460069 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 60460128
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
|| | ||||| || || ||||| | |||||||| || ||||||||| ||
Sbjct 60460129 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 60460179
>seq2
Length=114371477
Score = 105 bits (116), Expect = 6e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || |||||||| || | | || || | || ||||||||||| || |||||
Sbjct 110580027 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 110579968
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || ||||||||| | ||| | || ||||| ||| |||||| ||||| | |
Sbjct 110579967 GATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 110579908
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| || | |||||||| | ||||| || || || || | ||||||||
Sbjct 110579907 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCAC 110579848
Query 35725 AAATATCTGCATTCTG 35740
|| ||||||||| ||
Sbjct 110579847 GAAGATCTGCATTTTG 110579832
>seq7
Length=173848474
Score = 100 bits (110), Expect = 3e-16
Identities = 165/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562
||||| |||||||| | |||||||| | ||| | ||| |||||||||||| ||||
Sbjct 115442980 TTTATCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTA 115442921
Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622
|| | ||| || | | || ||||| ||||| || ||||| |||| | ||||| ||
Sbjct 115442920 GTCAGACAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATC 115442861
Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682
| ||||| | ||||| ||| |||||| ||| | | || | | ||| || |
Sbjct 115442860 AGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGG 115442801
Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
||| |||| | ||||| || || || | | |||||||| || ||||||||| ||
Sbjct 115442800 TTCAGCCTCGAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTTG 115442743
>seq24
Length=155392059
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570
|||||| | |||| || | ||| | ||| |||||||||||||||| | || | ||
Sbjct 3658046 CACCACAAAGTCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 3657987
Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630
| || || | || ||||| ||||| || ||||| |||| | ||||| || | |||||
Sbjct 3657986 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 3657927
Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690
| |||||| ||| |||||| ||| | | || | | || || | ||| ||||
Sbjct 3657926 TTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCT 3657867
Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735
| | ||||| || || ||| | | |||||||| || |||||||
Sbjct 3657866 CAAGGGTGATGGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCA 3657822
>seq21
Length=62195757
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/231 (69%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | |
Sbjct 17453547 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 17453488
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| | | | || ||||| | ||| | ||||| |||| | | ||| || | ||||
Sbjct 17453487 AAAGCACATCCATCCTCCAG-TTCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGGA 17453429
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| | |||| ||| | | || | | ||| || | ||| |||
Sbjct 17453428 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATCGTATCCGAGGGTTCAACC 17453369
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
|| | ||||| || || || || | ||||||||||| ||||||||| ||
Sbjct 17453368 TCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTTG 17453318
>seq8
Length=162613886
Score = 89.7 bits (98), Expect = 5e-13
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | |
Sbjct 160503471 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAGAC 160503412
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || | | || ||||| ||||| || ||||| |||| | ||||| || | ||||
Sbjct 160503411 A--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 160503354
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||| | | || | | | | || | ||| |||
Sbjct 160503353 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAACC 160503294
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
| | ||||| || || ||||| | ||||| | | ||||||||| ||
Sbjct 160503293 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTTATGGAAATCTGCATTTTG 160503243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450735706831920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |