Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq24 269 2e-67 seq1 140 3e-28 seq2 113 4e-20 seq7 104 2e-17 seq19 89.7 4e-13 seq9 89.7 4e-13 seq9803 84.2 2e-11 >seq24 Length=155392059 Score = 269 bits (298), Expect = 2e-67 Identities = 604/895 (67%), Gaps = 28/895 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || | | || ||||| || ||||| ||||| || || || |||| Sbjct 44584358 TTTGTCATCTTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCT 44584299 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA--GCACATTGGATTGCAT 43817 || || ||||| | || || || || || | || ||| | |||| | ||| | | Sbjct 44584298 TCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCAC-TGGGAATCCCC 44584240 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || || | || | | |||||||||| ||| ||| || ||||| || || || | Sbjct 44584239 GAAGCCCG-AGGAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATG 44584181 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||||||||| || ||| ||| |||||| ||||| |||||| Sbjct 44584180 GCATAGTAAATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTAC-AGAAGCC 44584122 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 44584121 CGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 44584062 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || || || |||||||||||| | || ||| | | || ||||| || | | Sbjct 44584061 CTTATTGACACTTACATCAAAGATCCCAAAGAAAAGGAATTTCTCTTCAATGCCATTG-A 44584003 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 || | ||| | || | ||||| |||||| | ||||| | | | Sbjct 44584002 ACGATGCCTTGTGTCAAGAAGGCGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAG 44583943 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||| ||||| |||| || || || | || |||||||| |||||||| || Sbjct 44583942 GCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGT 44583883 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| | ||||| ||| | ||||||||||| |||||||||| | |||||||| Sbjct 44583882 TCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCC 44583823 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||||| | || || | ||||| || ||||| || ||||||||||||||| | | | Sbjct 44583822 AATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCAAA 44583763 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | | || || || || ||| | | | ||| || || | | || || Sbjct 44583762 CACCTGGTACAC---AAACCATCGGAGGAGAAAGTGAGAGAAATAATTATCAATGCTGTT 44583706 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 |||||||||||||||| | || || || ||||| || | || || ||||| || Sbjct 44583705 CAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC 44583646 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 || | | ||||| ||||| ||||| | | ||||| | | | |||||||||||| Sbjct 44583645 AC-TCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTT- 44583588 Query 44473 CGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 | | || | || ||| | | ||| ||||| |||| ||| |||||||| || Sbjct 44583587 ---TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGACTTTACGGAGAATATTTCACTGA 44583531 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 ||| || ||||| ||||| | | || || || |||||| | ||||| || Sbjct 44583530 AAG-----ACTAACTTCTTTGAGAGGAGAGTAGGCGAGTATCAGAGGATGGGAGT 44583481 >seq1 Length=229774977 Score = 140 bits (154), Expect = 3e-28 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 |||||||||| ||| |||| || ||||| || || || || ||||| |||||||| | Sbjct 140699881 ATTTTATATCCCGTGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACT 140699822 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| ||||||||||| ||||| |||||| || ||||| |||| || Sbjct 140699821 TGGTGGAGCGATTTAGCCAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGACTTC 140699763 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| ||||| | ||||| |||||||| ||||| || || || || ||||| Sbjct 140699762 CAAATTGCCATGGAAAACACACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA 140699703 Query 44015 AAAGAT 44020 |||||| Sbjct 140699702 AAAGAT 140699697 >seq2 Length=114371477 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 10277973 CAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 10278031 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 10278032 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 10278080 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | |||||||||||||||||||| || || |||||| Sbjct 10280319 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTCTTTTGCG 10280378 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 10280379 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTT 10280438 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 10280439 ATTAGCAGAGATGA 10280452 >seq7 Length=173848474 Score = 104 bits (114), Expect = 2e-17 Identities = 253/380 (67%), Gaps = 9/380 (2%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | |||| || ||| | ||||| | || || ||| Sbjct 29563594 GTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACTTGTATTTTTGGGTTTGGAC 29563535 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331 || ||||| ||||| | | || |||||||||||| ||| |||| | || || Sbjct 29563534 AACGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 29563479 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || ||| |||||||||| || ||| | |||| ||||||||| || || |||| || Sbjct 29563478 TGTTCCAACACTACATCCGACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 29563419 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 ||||| | || ||||||| ||||| || | || |||||||| | || | | Sbjct 29563418 TCTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTATCTCCAAGCAAT 29563359 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511 | ||| || |||| | | || || | ||||||| || | || | || | ||| | Sbjct 29563358 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGT 29563299 Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571 || | |||| || | | |||||| | || | |||| || || | | ||||| Sbjct 29563298 TGAGCTTAATGCTTTAATGACTGATGAAATAATATCCAATGTGCCAATCCTTATATTGGG 29563239 Query 47572 CAATAAAATCGACA-AACAA 47590 || ||||| |||| ||||| Sbjct 29563238 TAACAAAATAGACAGAACAA 29563219 >seq19 Length=77229886 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 17297977 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 17297918 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| || || || || || ||||| || | Sbjct 17297917 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTGTGCCTTTCAACATCGCCA 17297858 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 17297857 GCTACGCCCTGCTCACGTACATGATTGCGCAC 17297826 >seq9 Length=144709823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 101019838 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 101019779 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 101019778 AACGAGTTTCAGAGTATCAGCG 101019757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 101043747 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 101043688 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 101043687 CTTCCTTCTGGACAGCAGAAGAGGT 101043663 >seq9803 Length=118565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| || || | |||||| | |||||| ||||| | |||||| || || ||||| | Sbjct 107965 TCCACCCATTTTTCTTCCAACCTTGAACCCAGTTAGTTATACCATTTATCGTAAACATAC 107906 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 ||||||| || | ||||| || ||||| || | ||| ||||||| | || ||| Sbjct 107905 TGTCTGTATACAGAACCAGTTTATTGATGTTCTGAGTCTGTGCTTGTTCAATGGCCTTGC 107846 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTG 77547 | || || || ||||| || | ||||||||||| Sbjct 107845 AGGCTGCATGAATTTCCGCTCTTTGGTTTGTCTG 107812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397406232795370