Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq2750 187 2e-42 seq19 116 3e-21 >seq2750 Length=44035 Score = 187 bits (206), Expect = 2e-42 Identities = 345/506 (68%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 42673 GAGAACAGACCTTATCCGTACCTGGTAACCGAGGCCAACTTGCTAAGGCAAGTTAGGGAA 42732 ||||||||||| | || |||||| || |||||| | || | | | || | Sbjct 28507 GAGAACAGACCCTTCCCCTACCTGACGGTGGATGCCAACCTACTCTCGAACCTGCGGCAG 28448 Query 42733 TCTGCAGCAGAGGGTCTCTTTAAGAGTTTTGAGCTCCTAGTTGGAAAGGACGTTAGAGAA 42792 || || || ||||| || ||| | || ||||| || || || || ||||| | |||||| Sbjct 28447 TCAGCGGCCGAGGGGCTGTTTCACAGCTTTGACCTGCTGGTGGGCAAGGATGCTAGAGAG 28388 Query 42793 AATGGAATTAAATTTGAGGTGCTATTAGGTGTTTACACTAATGTTGTCCAATTCGTCAAG 42852 || || || ||||| ||||| | || || ||||| || | | |||||| ||| Sbjct 28387 TCGGGCATCAAGTTTGAAGTGCTGCTTGGGGTCTACACGAACGCTATCCAATACGTGCGC 28328 Query 42853 TTTCTAGAAACCTCGTTGGCTATCGGATGTATAAATACCGAGTTTAAAGACTTGAAACGG 42912 ||||| || || | ||||| | ||| | || || || || |||||| ||| || Sbjct 28327 TTTCTGGAGACGGCACTGGCTGTGTCCTGTGTGAACACGGAATTCAAAGACCTGAGTCGT 28268 Query 42913 ATGACTAATGGTAAAATTCAATTTAAGATTTCGGTTCCCACAATAGCACACGGGGATGGT 42972 ||||| |||| || |||||||||| || || || |||||||| || ||||||||||| Sbjct 28267 ATGACGGATGGCAAGATTCAATTTAGAATCTCCGTCCCCACAATTGCTCACGGGGATGGA 28208 Query 42973 AGAAGACCTACTAAACAAAGGCAGTATATTGTAATGAAAGCATGTAACAAACACCACATA 43032 || ||||| | ||| || || | ||||| | || || ||||||||||||| Sbjct 28207 AGGAGACCCAGTAAGCAGCGGACCTTCATTGTGGTCAAGAATTGCCACAAACACCACATC 28148 Query 43033 AGTACAGAAATTGAACTGGCTGTTCTTGACCTTGAGATTTTAAACAGTTCCCAGGAGACA 43092 ||||| ||||| || ||| | | || ||||| ||||| | |||| || ||||| Sbjct 28147 AGTACGGAAATCGAGCTGTCCATGCTGGACCTGGAGATCCTGCACAGCATCCCCGAGACC 28088 Query 43093 CCACTAGATGTCACAGAATATGTTGGTGCTGTAAAAACAATAACATCAGCTCTACAGTTT 43152 || | || | || || || || ||||| || || | | || || ||||||||| Sbjct 28087 CCTGTCGAATATGCGGAGTACGTGGGGGCTGTCAAGACCGTGGCCTCGGCCCTACAGTTT 28028 Query 43153 GGGGTAGACGCTCTGGAAAGGGGGCT 43178 ||||| || || || || ||||| || Sbjct 28027 GGGGTCGATGCCCTAGAGAGGGGCCT 28002 Score = 98.7 bits (108), Expect = 8e-16 Identities = 206/307 (67%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 55290 ATAGTGATGTATGATGGAATATGTAATCTGAAACATGGGCATGATACTATAGAGTCTTGT 55349 || |||||||| || || ||||| | | || || ||||| || || || ||| || Sbjct 20675 ATGGTGATGTAAGACGGGATATGCAGGCGAAAGCAGGGGCACGAGACCATGCTGTCCTGC 20616 Query 55350 AAATTGAAGTCTTCTTTATGTTGGGTGCAAACATAATTTACCACATTCAACATTTTTTCA 55409 | | || |||| |||| | || |||||| ||||||| |||| || || Sbjct 20615 ATGTCAAAATCTTGCCTATGCTCCTGACACACATAACTTACCACGTTCAGCAGCCGCTCC 20556 Query 55410 GATGCATTTTTTAAATTATATAAAAAACTGGTTGTTTGGTCCGATGAGTTCACTGAAGAT 55469 || | || | ||||| | ||| ||||| | ||||| | ||||| || || || Sbjct 20555 TGAGCGTCCTTCAGCTTATAAAGAAAGCTGGTGGCCTGGTCGGCCGAGTTTACGGACGAG 20496 Query 55470 ATAAAAATTAATTTGGCATCCTTTTGAAGCATAAATCCTAAAATCGATGGCAATGAGTCT 55529 || || || | ||||| ||||| ||||||||||| || | |||| |||| | || Sbjct 20495 ATGAAGATGATCTTGGCGTCCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGGGCCTCC 20436 Query 55530 TTCTTGATGAAATTTGCCTCATCTATGTACAATAAATTGAAGGTTTGACCTCTGATGCTC 55589 |||||||| || || |||||||| | |||| | | || || || || | |||||| Sbjct 20435 TTCTTGATAAAGTTGGCCTCATCCACAAACAAGAGGTGAAATGTCTGCCCCCGAATGCTC 20376 Query 55590 TGAAAAA 55596 ||||||| Sbjct 20375 TGAAAAA 20369 >seq19 Length=77229886 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| ||||||||||| ||||| || ||| || || ||||| || |||||| Sbjct 17297818 CCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACA 17297877 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| ||||||||||| || || ||||| || || || | | | | |||| Sbjct 17297878 CCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACA 17297937 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 17297938 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 17297976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391896522776662