Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 seq24 91.5 2e-13 seq18 91.5 2e-13 seq2 86.0 7e-12 >seq4 Length=205426864 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 25856691 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 25856750 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 25856751 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 25856810 Query 117425 ATCGT 117429 || || Sbjct 25856811 ATAGT 25856815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 25856691 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 25856750 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 25856751 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 25856810 Query 152149 ATCGT 152153 || || Sbjct 25856811 ATAGT 25856815 >seq24 Length=155392059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||||| ||||||||||| ||||| || ||| Sbjct 44583797 CCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTC 44583856 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || || | || |||||| |||||||||||||| || || ||| Sbjct 44583857 TTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAG 44583916 Query 74889 GCGACAAGGCGTT 74901 || |||| |||| Sbjct 44583917 GCTACAACACGTT 44583929 >seq18 Length=83442489 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | || || | |||||||||||| |||| || |||||||| Sbjct 17112457 GTAAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 17112398 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 17112397 CCAATGGGCTGCAAGAGGTTTAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 17112338 Query 152149 ATCGT 152153 || || Sbjct 17112337 ATGGT 17112333 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || ||||| || | || |||| ||||||||||||| || | ||||| || || Sbjct 17112457 GTAAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 17112398 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||| || || ||| |||||||| || |||||||| |||| | Sbjct 17112397 CCAATGGGCTGCAAGAGGTTTAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 17112338 Query 117425 ATCGT 117429 || || Sbjct 17112337 ATGGT 17112333 >seq2 Length=114371477 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || || ||||| ||||| |||||||| || |||||||| Sbjct 10280392 AGCCAGAATATCGACGCA-AAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10280334 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 10280333 TACAACACGTT 10280323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547145723785200