Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2750 93.3 6e-14 seq10 91.5 2e-13 seq16 89.7 7e-13 seq4884 86.0 8e-12 >seq2750 Length=44035 Score = 93.3 bits (102), Expect = 6e-14 Identities = 288/443 (65%), Gaps = 18/443 (4%) Strand=Plus/Minus Query 177286 CACATGCTGCACGCCGTGGTCTTCATGTACTGGTTCTACAACGCCCTCGGAG-ACACCCC 177344 ||||| ||| |||||||||||| |||||||||| ||||| ||| | | |||||| Sbjct 4970 CACATTCTGACCGCCGTGGTCTTTTGCTACTGGTTCTTCAACG-CCTGGCTGCGCACCCC 4912 Query 177345 CCAGTACCGCCGCCGCCTGGTGCCCTGCCTGGTCTGCATCGGCTCGCCGACCCAGTCGGA 177404 || ||||||||| ||| || |||||| | |||||| | || || ||||||||| | || Sbjct 4911 CCTGTACCGCCGAGGCCGCGTCCCCTGCATAGTCTGCGTGGGATCCCCGACCCAGACCGA 4852 Query 177405 GGCCATCACCACCACCTT---CGACCACAGCCGGCAGAACAGCATCGTCAGGAGGGGGCG 177461 ||| | || |||| | || | | || | |||| || || ||| | | Sbjct 4851 CGCCTTTCAGTCCTCCTTTAGCCACGAGACCCAGGTCAACAAGAT--TCGCGAGTGCG-A 4795 Query 177462 CGACATCCTCTCGTCGCTCATCTGCGACCCGCACATGATGCGG--TACTGCGACACCGAG 177519 | |||||||| | | || | || |||| || | ||| ||| ||| | Sbjct 4794 CAACATCCTCACCTTCCTGGTGGGCAACCC-CA-GGGCCTCGGCCTACGTGGACGTGGCC 4737 Query 177520 AGGAACTGGGTGCTCTTCATCAACAACAAGAGGTGCACGGACGTCGACTTCGGCAGCCTG 177579 | ||||||| |||||||||||||||||| | ||||| |||||| | || || ||| Sbjct 4736 CGCAACTGGGCCCTCTTCATCAACAACAAGCGCTGCACCGACGTCCAGTTTGGGCACCTC 4677 Query 177580 CTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAGCACCTGGCCTACGTGGACCGG 177639 | || || ||| |||||||||||| ||||| Sbjct 4676 ATGAAGACCCTCGAGTACGGCCTCGAGCTCTCGCCGGAGATCCTGGCCTACGTCGACCGC 4617 Query 177640 TTCGTGCGGCCCGGGTCGTTCATCAAGGA-CCCGCGCA--ACGTGCCGGACATGACCCGG 177696 ||||| ||| || || ||||| ||| |||||||| |||| || | ||||||| Sbjct 4616 TTCGTCGTCCCCAGGGCGGCCATCATGGACCCCGCGCAGTACGT---GGGCTGGACCCGG 4560 Query 177697 CTCTTCATCTCGCACAGCGAGGT 177719 |||||| |||| ||| |||||| Sbjct 4559 CTCTTCCTCTCCCACGCCGAGGT 4537 >seq10 Length=138149186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 235/356 (66%), Gaps = 4/356 (1%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || |||||||| || ||| | Sbjct 75363717 GAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAGATTGACATGCTT 75363776 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | || |||||||||||||| || ||||| |||||||| | || |||||| | Sbjct 75363777 GACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATTCATGTGGACACA 75363836 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || |||| || | || | | | || || |||||| || || ||| | Sbjct 75363837 AAATCCGAGGATTCCTATTTAGC--TGCAGTGATGGGCATCGCTTCCTGTTTTAGTAATG 75363894 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| ||| || | ||||| || | || ||||| || || ||||| | Sbjct 75363895 TCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGCCGGGTTCAGGCTG 75363954 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||||| ||||||| ||| || | || | || |||| |||| || | || | Sbjct 75363955 ACCTCAACTGCATGAAGGATCTCTATGCGATGAGTGCAAACTGGAAGTACTTGATAAATC 75364014 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 | || || ||||| || || | || |||||||| || || || || ||| ||| Sbjct 75364015 TTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGGAAGCTCAAG 75364070 >seq16 Length=99763055 Score = 89.7 bits (98), Expect = 7e-13 Identities = 184/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG--GACGC 14334 ||||| || ||||| || || ||||| ||||||||| | ||| | || |||| || || Sbjct 56893685 GACACTTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACGGTGGATGC 56893742 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | ||| ||| ||||||||||| ||| |||||| | | | |||| Sbjct 56893743 CTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGACTTCTATTGCCAGGC 56893802 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| | ||||| || ||| | || || || | || | || ||| Sbjct 56893803 TGGTCAAGTGGCAGGGTCATGAGGGAGACATCGATAAGGGTGCTCCTTATGCTCCCTGCT 56893862 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGA 14514 || |||||| | || |||||||| | ||| | || ||| |||| ||| || Sbjct 56893863 CTGGAATCCACCAGCGGGCTATCTGCATTTATGGGGCTGGGGACTTGAATTGGATGCTTC 56893922 Query 14515 GCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | || |||||||| ||||||||||| ||| Sbjct 56893923 ACAACCATCACCTGTTGGCCAACAAGTTTGAC 56893954 >seq4884 Length=4766 Score = 86.0 bits (94), Expect = 8e-12 Identities = 200/295 (68%), Gaps = 14/295 (5%) Strand=Plus/Minus Query 101300 GGCCAGCTAGGCCTGGATAACGAGATCTTGCTGGGCCAGTACAGGACCGAGCTGTGTCAG 101359 || ||||| ||| || ||||||||||| || | || | | ||| ||| ||| ||| Sbjct 1774 GGGCAGCTGGGCACCGACAACGAGATCTTCCTCACCAAGAAGATGACGGAGTCGTGCCAG 1715 Query 101360 GAAAACTCCATCCGGTACTTCAT--AG-CGGGCAGGTTCATACACGTCTTCAAAGACTAC 101416 | | ||| || ||||| | | || | |||| || ||||||| | | ||||| Sbjct 1714 GCGA---CCAGCCAGTACTACTTCCAGTCCGGCAACGAGATCCACGTCTACCACGACTAT 1658 Query 101417 AAGTTCCAC---CACACCATCAACCT-CACGAGCATCGACATCGTGGACACCTTCATCCA 101472 | |||| | |||||| | || ||| |||||| || | || | ||||||||| Sbjct 1657 CA---CCACTTTAAAACCATCGAGCTGGACG-GCATCGCCACCCTGCAGACCTTCATCGC 1602 Query 101473 CCTCAACATCTCCTTCCTGCAGAACATCGACTTTCAGATGCTCAGGCTGTACACGCAGGA 101532 ||| |||| |||| || | ||||||| |||||| | ||| ||||||| ||| ||| Sbjct 1601 CCTAAACACCTCCCTCATCGAGAACATTGACTTTGCGTCGCTGGAGCTGTACTCGCGGGA 1542 Query 101533 GGAGCAGTTCGCCTCCAGACTCCTCGACCTGGAGACCCTGTTCAGGGACTTCAAC 101587 |||||| || |||| || | ||||||||| | | ||| |||| | |||| Sbjct 1541 CGAGCAGCGGGCATCCAACGTCTTTGACCTGGAGGGCATCTTCCGGGAGTACAAC 1487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658654601418240