Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 8e-15 seq9 86.0 4e-12 seq15 82.4 5e-11 >seq13 Length=135337776 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 116540582 GCCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTCTAGTCTGA 116540641 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || | | | || || || ||||| || ||||||| | || ||| ||||| ||| | Sbjct 116540642 GAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGGTCAGGCAG 116540701 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| || ||||| Sbjct 116540702 GATGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCACCGGGCTCCA 116540760 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||| ||| |||||||| Sbjct 116540761 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCAT 116540809 >seq9 Length=144709823 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || |||||| ||| || || ||||| || ||||| Sbjct 122689513 GCCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGA 122689454 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| || |||| ||| | |||||| ||||| || || Sbjct 122689453 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 122689394 Query 34599 CACTCCCTCCTTGTC 34613 | ||||||||||| Sbjct 122689393 GATGCCCTCCTTGTC 122689379 >seq15 Length=107357366 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| | ||| ||| ||| || || ||||| || |||| Sbjct 57005340 GCCACCTCGCAGGCGCAGCACCAGGTTGAGGGTGGACTCTTTCTGGATGTTGTAGCCTGA 57005281 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | | || || || |||| | | |||||| | | |||| ||||| || || Sbjct 57005280 GAGAGTGTGGCCATCCTCCAGCCGTTTCCTAGAAAATATCAGATGCTGCTGGTCAGGTGG 57005221 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||| ||||| || | |||| ||||| | || | Sbjct 57005220 GATACCCTCCTTGTC-CTGAATTTTGGTTTTGACATTCTAAATGGTGTCGGTGGGCTTGA 57005162 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 57005161 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 57005113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314690191329842