Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9876 107 2e-18 seq4 93.3 4e-14 seq10 91.5 1e-13 seq8 86.0 5e-12 seq17 82.4 7e-11 >seq9876 Length=376000 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC--GT 27045 |||||||| || || ||||| || ||||||||| || || ||||||||||| || || Sbjct 277953 ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGATCATCACCCTTGAAGTGGAGCCCAGT 278012 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| || || | ||||| ||||| ||||| |||||||||| || | || | Sbjct 278013 GCCACT--ATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCAATCCCCATGACC 278070 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | || | || ||||| || ||||||| | | | |||| || |||| Sbjct 278071 AGCAGAAGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCTGCAGTCTTTCTGACTACA 278130 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||||||| | ||| |||| ||||| || | ||||| || Sbjct 278131 ACATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGTAT 278182 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||| ||| | || || || || ||||| || Sbjct 278181 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGAGCCCAGT 278240 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACC-CGATCA 27106 ||| | || || | || ||| || || || || |||||||||| || || |||||| Sbjct 278241 GACACCATCGAAAATGTGAAAGCCAAGATCCAGGATGAAGAAGGCATCCCCCCGCGATCA 278300 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| | |||||||| | || |||| || |||| Sbjct 278301 GCAGAGGCTCATCTTTGCAGGCAAGAAGTTGGAAGATGGCCGCACTCTTTCTGACTACAG 278360 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || |||||||||||| | || |||| |||| || |||||||| Sbjct 278361 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 278409 >seq4 Length=205426864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| ||||| || || || || |||||| | || |||||||| || | || || Sbjct 27700148 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGACGTCAAGCCAAGTGA 27700207 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | | ||||||| || ||| |||||||||||| ||| ||| || ||||| || || || Sbjct 27700208 CACCATTGAGAATGTGAAAGCCAAAATTCAAGAC-AAGGAGGTATCCCACCTGACCAGCA 27700266 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 || | | ||| || |||||||| |||| || | || | || || | |||||| Sbjct 27700267 GCATCTGATACTTGCTGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTGCAACAT 27700326 Query 27170 TCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || ||||| ||| | || |||| |||| || |||||||| Sbjct 27700327 CCGGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGTAAGGTGGCAT 27700374 >seq10 Length=138149186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| || || || Sbjct 22464929 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 22464988 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||| |||||||||||||| || || || || || || | Sbjct 22464989 GACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAG 22465048 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||| ||||||| |||| || | || | || || |||||| Sbjct 22465049 CAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 22465108 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || || || | ||| || |||| ||| |||| |||||||| Sbjct 22465109 GTCCAGAAACAGCCCACCCCGCACCTGGTGCTGCACCTGCGAGGTGGCAT 22465158 >seq8 Length=162613886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || || Sbjct 25942056 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 25941997 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| ||||| |||||||||||||| || ||||| |||| || || Sbjct 25941996 GACACCACTGAGAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACTTGACCAG 25941937 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 || ||| | |||| || |||||||| |||| || Sbjct 25941936 CAACGTCTGATATTTGCGGGCAAACAGCTGGAGGA 25941902 >seq17 Length=90481686 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||||| || Sbjct 60460175 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 60460116 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 60460115 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 60460056 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || | || || ||||| Sbjct 60460055 CAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTACAAT 60459996 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||||||||| || | ||| | || ||| Sbjct 60459995 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 60459963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434862545604480