Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq19 165 7e-36 >seq19 Length=77229886 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||||||||||||| ||||| || || |||||||| ||||| || | ||| Sbjct 17297827 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCGAGGCCC 17297886 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 17297887 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 17297946 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || |||||||||||||| ||||| Sbjct 17297947 CAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATC 17297987 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||| |||||||||| ||||| || | ||| Sbjct 17297987 GATCTTCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 17297928 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| | || ||||| ||| Sbjct 17297927 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTCGGTGTGCCTTTC 17297868 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||||||||||||||| || || Sbjct 17297867 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 17297827 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||||||||| || || || Sbjct 17305556 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 17305615 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| ||||||||| || || | || |||||||| ||| Sbjct 17305616 CTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 17305675 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 17305676 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 17305709 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 17305709 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 17305650 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||| | | | || || || ||||||||||| || | Sbjct 17305649 GAGACTTTTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGGGACTTGGGCCCAGTTT 17305590 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 17305589 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 17305556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448204831901280