Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2750 199 3e-46 seq4 197 1e-45 seq2 159 3e-34 seq19 118 9e-22 >seq2750 Length=44035 Score = 199 bits (220), Expect = 3e-46 Identities = 413/609 (68%), Gaps = 8/609 (1%) Strand=Plus/Minus Query 49637 TCTGCTGCAGAAGGTCTCTTTAAGAGCTTCCAGTTGCTGCTTGGCAAGGATGTCAGAGAA 49696 || || || || || || ||| | ||||| | ||||| | |||||||||| ||||| Sbjct 28447 TCAGCGGCCGAGGGGCTGTTTCACAGCTTTGACCTGCTGGTGGGCAAGGATGCTAGAGAG 28388 Query 49697 AATGGAGTAAAATTTGAAGTGCTGCTTGGTGTTTATACAAGCGCTGTACAATTTGTTAAG 49756 || | || ||||||||||||||||| || || || | |||| | |||| || Sbjct 28387 TCGGGCATCAAGTTTGAAGTGCTGCTTGGGGTCTACACGAACGCTATCCAATACGTGCGC 28328 Query 49757 TTTCTAGAAACCTCATTGGCTGTTAGTTGTGTTAACACAGAGTTTAAAGACCTGAAGAGA 49816 ||||| || || || ||||||| ||||| ||||| || || |||||||||| | Sbjct 28327 TTTCTGGAGACGGCACTGGCTGTGTCCTGTGTGAACACGGAATTCAAAGACCTGAGTCGT 28268 Query 49817 ATGACAAATGGTAAAATTCAATTTAAGATATCAGTTCCTACAATTGCTCACGGTGATGGG 49876 ||||| |||| || |||||||||| || || || || |||||||||||||| ||||| Sbjct 28267 ATGACGGATGGCAAGATTCAATTTAGAATCTCCGTCCCCACAATTGCTCACGGGGATGGA 28208 Query 49877 CGAAGACCAACTAAACAG-AGACAGTACT--TGGTTATGAAAGCATGCAACAAGCATCAC 49933 | ||||| | ||| ||| ||| | | |||| | ||| ||| |||| || ||| Sbjct 28207 AGGAGACCCAGTAAGCAGCGGACCTTCATTGTGGTCAAGAA---TTGCCACAAACACCAC 28151 Query 49934 ATAAGCACTGAGATAGAACTTGCTGTATTGGATCTGGAAATTTTACA-TGCCTCTCAAGA 49992 || || || || || || || | | |||| ||||| || | || || || | || Sbjct 28150 ATCAGTACGGAAATCGAGCTGTCCATGCTGGACCTGGAGATCCTGCACAGCATC-CCCGA 28092 Query 49993 AACTCCTCTTGATTTAACTGAATACATTGGAGCTGTCAAAACTCTAACATCAGCTCTCCA 50052 || ||| | || | | || ||| | || |||||||| || | | || || || || Sbjct 28091 GACCCCTGTCGAATATGCGGAGTACGTGGGGGCTGTCAAGACCGTGGCCTCGGCCCTACA 28032 Query 50053 ATTTGGCATTGATGCTTTAGAGAGAGGACTTGTGGACACTGTTCTTAATGTAAAAATAAG 50112 ||||| | ||||| ||||||| || || | |||| || || | ||||| | | Sbjct 28031 GTTTGGGGTCGATGCCCTAGAGAGGGGCCTCATCAACACGGTCCTGAGCGTAAAGCTCCG 27972 Query 50113 GTGTGCACCTCCTCTTTTTATTTACAAGACATTGTCAGATCCCACATATGTTGAAAGGGG 50172 ||| || || | ||||| |||| || | |||||||| | || ||||| Sbjct 27971 CCATGCCCCACCCATGTTTATCCTGCAGACCCTGGCGGATCCCACCTTCACCGAGAGGGG 27912 Query 50173 ACTTaaaaaaaCAGTTAAGTCTGATCTGGTTGCCATGTTCAAGTCTCATCTGCTGGAAAA 50232 || || || || |||||||| || | |||||||||||| ||||||||||| | Sbjct 27911 GCTCTCCAAGACTGTCAAGTCTGACCTCATCGCCATGTTCAAGAGACATCTGCTGGAGCA 27852 Query 50233 TTCATTCTT 50241 ||| ||||| Sbjct 27851 TTCCTTCTT 27843 >seq4 Length=205426864 Score = 197 bits (218), Expect = 1e-45 Identities = 374/545 (69%), Gaps = 9/545 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 97806119 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 97806060 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 |||| || || | |||||||| | |||| || | |||||| | ||||||| Sbjct 97806059 AGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 97806000 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 97805999 GAGGGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 97805942 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| ||| | || || || || | Sbjct 97805941 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 97805882 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 || || ||||| ||| |||| | |||| | ||| | || | || ||| | ||| Sbjct 97805881 CATAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAACGAC 97805822 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 97805821 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 97805762 Query 2495 AGAGCATTACAAGATCT-TGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | || || | | | || ||| | |||||||| |||| | ||| Sbjct 97805761 A-AGCCATGAATCACCTAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTT 97805703 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || |||||||| | | ||||| |||| || |||||| Sbjct 97805702 GAAAGTGACACGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCTGAATAC 97805643 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| ||||| || || || | || || | ||||||||||| ||||| Sbjct 97805642 CCAGGTGTTCTCTCTGATGTCCAGGAGGGGAAACACATCAAGTACAAATTTGAAGTATAT 97805583 Query 2674 GAAAA 2678 || || Sbjct 97805582 GAGAA 97805578 Score = 172 bits (190), Expect = 5e-38 Identities = 183/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 ||| ||| || |||| ||||||| |||||||| ||| ||||| ||||||||||| Sbjct 116416558 AAATGCC-CAGGAAGCCCTCATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAA 116416616 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 |||||| ||| || || | |||| ||||| || | ||||| || || || || || | Sbjct 116416617 ACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGACAAGA 116416676 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| || |||| ||||| |||||| |||| || ||||||||||| | || ||| Sbjct 116416677 TAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGG 116416736 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| Sbjct 116416737 AGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAA 116416796 >seq2 Length=114371477 Score = 159 bits (176), Expect = 3e-34 Identities = 347/510 (68%), Gaps = 21/510 (4%) Strand=Plus/Plus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| || || || || | ||||| ||||| || || | |||||||| | Sbjct 84492588 AACATGGGCATCGGCAAGAACGGGGACCTGCCCTGGCCACCGCTCAGGAATGAATTCAGG 84492647 Query 2227 CATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATG 2283 |||| || | | |||| | | ||| | | | ||||||||| | || |||||| Sbjct 84492648 TATTTCCAGAGAGTGACCACAACCTCCTCAGTAGAAGGTAAACAGAATTTGGTGATTATG 84492707 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGAACAACAGAATAA 2341 || || |||| ||||| || |||| | | ||| | | ||||| || || ||||| | Sbjct 84492708 GGTAGGAAGATCTGGTTCTCCATTCC--TGAGAAGAATCGACCTTTAAAGAATAGAATTA 84492765 Query 2342 ATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAA 2401 || | |||||||| ||| ||| || || || |||| || | ||| ||| |||||| || Sbjct 84492766 ATTTAGTTCTCAGGAGAGACCACAA-GAACCTCCACAAGGAGATCAATTTCTTGCAAGAA 84492824 Query 2402 GTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGA 2461 || | ||| | || || ||| | ||||| |||||||||| | | | || || | || Sbjct 84492825 GTCTGGATGATGC-CTTAAAACT-TAATA--ACCAGAATTAGCAAATAAAGTAGACATGA 84492880 Query 2462 TTTGGATAATTGGTGGAAGATCTGTCT-ATGAGGAGAGCATTACAAGATCTTGCAAACAG 2520 |||||||| ||||||| || ||| | | || |||| ||| | ||| ||| ||| Sbjct 84492881 TTTGGATAGTTGGTGGTAGTTCTATTTTATAAGGAATCCATGA----ATCACTCAAGCAG 84492936 Query 2521 ----ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGA 2576 | || ||| | |||||||| | || | |||||| |||| || | || ||||| Sbjct 84492937 TCTTAAACTATTTGTCACAAGGATCATACAGGACTTTGAAAGTGACACGTTTTTTCCAGA 84492996 Query 2577 AATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCA 2636 |||| || | ||||| ||| || | |||| |||| |||| || || || || Sbjct 84492997 AATTGATTTGGAGAAATATAAATTTCTGCCAGAATACCCAGATGTTTTCTTTGATGTCCA 84493056 Query 2637 AGAAGAAAATGGAATTAGATACAAATTTGA 2666 || || || || |||| ||||||||||| Sbjct 84493057 GGAGGAGAAAGGCATTAAGTACAAATTTGA 84493086 >seq19 Length=77229886 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 59991482 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 59991423 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 59991422 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 59991363 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 59991362 ATCGCCCTGTGGATGACTGA 59991343 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 17297815 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 17297874 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 17297875 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 17297934 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 17297935 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 17297975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414424901546536