Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 1e-13 seq9 89.7 4e-13 >seq13 Length=135337776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 39049 TTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTA 39108 ||| | | ||| |||| | ||| | ||||| || || ||| |||||| || || || Sbjct 116540574 TTAATAATGCCACCTCACAGGCGCAGCACCAGGTGAAGGGTGGACTCTTTCTGGATGTTC 116540633 Query 39109 TAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGG 39168 || || | || | | | || || |||||||||||| ||||||| |||| ||||||| Sbjct 116540634 TAGTCTGAGAGACTGTGGCCATCCTCCAGCTGTTTGCCCACAAATATCAGACACTGCTGG 116540693 Query 39169 TCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTC 39228 || | | | || ||| ||||| |||||| ||||| || | | || || | Sbjct 116540694 TCAGGCAGGATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACCG 116540753 Query 39229 GACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | |||||| || | ||||| | || ||||| || || || | |||||| ||||||| Sbjct 116540754 GGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTGTTCATAAAGATCTGCATCT 116540811 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || ||||| | ||||| || || ||| |||||| || || || || || | Sbjct 126789303 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 126789362 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 126789363 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 126789422 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || ||||| ||| || ||||| || | | || || || | ||| || Sbjct 126789423 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 126789482 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || | ||||| | || || || || || || || |||||||||||| Sbjct 126789483 TCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCATC 126789530 >seq9 Length=144709823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 122689513 GCCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGA 122689454 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || |||||||||||||||| ||| |||||||||||||| ||||| Sbjct 122689453 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 122689394 Query 39176 GCACGCTCTCTTTGTCCATGATTTT 39200 | | || ||| |||||| ||| ||| Sbjct 122689393 G-ATGCCCTCCTTGTCC-TGAATTT 122689371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429491814716162