Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq17 118 7e-22 seq10 98.7 7e-16 seq18 95.1 8e-15 seq15 95.1 8e-15 seq13 95.1 8e-15 seq4 91.5 1e-13 seq2 91.5 1e-13 seq7 87.8 1e-12 seq24 86.0 4e-12 seq21 84.2 1e-11 seq8 84.2 1e-11 >seq17 Length=90481686 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 60460178 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 60460119 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 60460118 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 60460059 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | ||| ||||| || ||| Sbjct 60460058 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 60459999 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 60459998 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 60459961 >seq10 Length=138149186 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||| || || || || ||| Sbjct 22464929 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 22464988 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | | | |||||| ||||| || ||| | || || || | Sbjct 22464989 GACACCATTGAGAATGTCAGTGC-GAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAA 22465047 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | ||||||||| ||||||| ||||| || | |||||| | || ||||| Sbjct 22465048 GCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAA 22465107 Query 23790 CATACAAAAAGAGTCCAC 23807 | | || ||| || |||| Sbjct 22465108 CGTCCAGAAACAGCCCAC 22465125 >seq18 Length=83442489 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || | ||| ||| | ||||| | Sbjct 46140504 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACAACCACCCTCAAGGTTGAACCA 46140445 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 46140444 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 46140385 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || ||||| ||||| ||||||||||| | | ||||| | ||| Sbjct 46140384 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGATATACTTTGTCTGGCTAC 46140325 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| || | ||||| || || || |||| || || Sbjct 46140324 AATATTCAAAAAGAGTCTACCCTTCATTTTGTGTTGAGACTGCGTGGTGG 46140275 >seq15 Length=107357366 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || || ||||| || || || | |||| Sbjct 57005113 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCAAGCCCACC 57005172 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| || | ||| | ||||| |||||| ||||| || ||| | || || || || Sbjct 57005173 GACACCATTTAGAATGTCAAAAC-CAAAATTCAGGACAAGGAGGGTATCCCACCTGACCA 57005231 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT---TTAGGCGATTA 23786 |||| | | |||||| | | |||| ||||| || | | |||| | |||| || Sbjct 57005232 GCAGCATCTGATATTTTCTAGGAAACGGCTGGAGGATGGCCACACTCTCTCAGGC---TA 57005288 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 57005289 CAACATCCAGAAAGAGTCCAC 57005309 >seq13 Length=135337776 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || ||||| || || || ||||| || || || || ||| Sbjct 126789529 ATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 126789470 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||| || ||||| ||||| | || || || || Sbjct 126789469 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 126789410 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || ||||| |||||||| | |||||| | || |||||| Sbjct 126789409 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 126789350 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 126789349 ATCCAGAAAGAGTCCAC 126789333 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || || || || ||||| ||||| ||||| ||| Sbjct 126789758 AATGCAGATCTTTGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAG 126789699 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | || || ||||| | || || || | Sbjct 126789698 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGATAAGGAAGGCATCCCTCCTGACC 126789640 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| ||||| |||||||| | || || | || |||| Sbjct 126789639 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACA 126789580 Query 23789 ACATACAAAAAGAGTCCACATTACA 23813 |||| || ||||||||||| || || Sbjct 126789579 ACATCCAGAAAGAGTCCACCTTGCA 126789555 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || | || ||||||||||| || || ||||| || || || || || Sbjct 116540809 ATGCAGATCTTTATGAACACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGCCCGGT 116540750 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| | ||||| || || | | ||| || || Sbjct 116540749 GACACCATTGAGAATGTCAAAGCTAAAA-TCCAAGACAAGGAGGGCATCCTGCCTGACCA 116540691 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | ||||||| |||||||| ||||| || | | || | | || || || Sbjct 116540690 GCAGTGTCTGATATTTGTGGGCAAACAGCTGGAGGATGGCCACAGTCTCTCAGACTAGAA 116540631 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 116540630 CATCCAGAAAGAGTCCAC 116540613 >seq4 Length=205426864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| || || || ||||||||||| || || |||||||| || || | | | || Sbjct 27700148 GCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACTCTTGACGTCAAGCCAAGTGA 27700207 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| |||| ||| | ||| | |||| || ||||| || ||| | || || || || | Sbjct 27700208 CACCATTGAGAATGTGAAAGCCAAAA-TTCAAGACAAGGA-GGTATCCCACCTGACCAGC 27700265 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 ||| | | ||| |||| |||||||| ||||| || | || ||| | || | ||||| Sbjct 27700266 AGCATCTGATACTTGCTGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTGCAACA 27700325 Query 23792 TACAAAAAGAGTCCAC 23807 | | ||||||||||| Sbjct 27700326 TCCGGAAAGAGTCCAC 27700341 >seq2 Length=114371477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| || || || || ||||| || || || || || Sbjct 110579833 AAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGCCC 110579892 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || || ||||| | || || || Sbjct 110579893 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGAC 110579952 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 110579953 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 110580012 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 110580013 AACATCCAGAAAGAGTCGAC 110580032 >seq7 Length=173848474 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| | || || || ||||| ||||| | ||| || Sbjct 115442744 AAAATGCAGATTTTCGTGAAAACCCTTATGGAGAAGACCATCACCCTCGAGGCTGAACCC 115442803 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 115442804 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 115442863 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| || || ||||||||||| | | | ||||| || ||| Sbjct 115442864 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 115442923 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | || ||||| ||||| || | ||| | || || || Sbjct 115442924 AGTATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 115442961 >seq24 Length=155392059 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||| ||||||||||||| |||||||| | ||| || || ||||| || || ||||| || Sbjct 3657818 AAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGTTGAACCC 3657877 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | | |||| |||| || || || || || || | || || ||| Sbjct 3657878 TCAGATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCTGAT 3657937 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || | | Sbjct 3657938 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 3657997 Query 23788 AACATACAAAAAGAG 23802 ||||| ||||| ||| Sbjct 3657998 AACATTCAAAAGGAG 3658012 >seq21 Length=62195757 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || ||||||||||| || || || ||||| ||||| ||||| || Sbjct 17453319 AAAATGCAGATTTTTGTGAAAACCCTCACAGGGAAGACCATCACCCTCGAGGTTGAACCC 17453378 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || | || || ||||| | || || ||| Sbjct 17453379 TCGGATACGATAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGAT 17453438 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || | | | || ||||| || || ||||||| || | | | |||| || ||| Sbjct 17453439 CAGTAAAGACTGATCTTTGCTAGC-AAGAACTGGAGGATGGATGTGCTTTGTCTGACTAC 17453497 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| | || || || Sbjct 17453498 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 17453535 >seq8 Length=162613886 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||| | | |||||||| ||||| || || ||||| ||| | ||||| || Sbjct 160503244 AAAATGCAGATTTCCATAAAAACCCTTACGGGGAAGACCATCACCCTCAAGGTTGAACCC 160503303 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| | | |||| |||| || || || || ||||| | || || ||| Sbjct 160503304 TTGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 160503363 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | | | ||| | || ||| Sbjct 160503364 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTGT--CTGACTAC 160503421 Query 23788 AACATACAAAAAGAG 23802 ||||| ||||| ||| Sbjct 160503422 AACATTCAAAAGGAG 160503436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337967276339192