Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq19 149 5e-31
seq4 113 4e-20
>seq19
Length=77229886
Score = 149 bits (164), Expect = 5e-31
Identities = 132/165 (80%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || |||
Sbjct 17297815 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 17297874
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| ||||| |||||||| || || |||||||| |||||||| || ||||| | || |
Sbjct 17297875 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 17297934
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | ||||||||| ||||| || ||||| |||
Sbjct 17297935 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 17297979
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || |||| ||| || ||||| ||| |||
Sbjct 17305568 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTGGAGAAT 17305627
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||||||||||| ||| || ||||| |||||||| || || |||||
Sbjct 17305628 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 17305687
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| |||||||| | |||||||| ||
Sbjct 17305688 GACAGCTCTTTAGCATTTGTGGATCC 17305713
>seq4
Length=205426864
Score = 113 bits (124), Expect = 4e-20
Identities = 184/260 (71%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| | || || || || || || |||||||| |||| || | || || |
Sbjct 97805868 ATGAGCTCCTTATGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 97805927
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| ||
Sbjct 97805928 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 97805987
Query 114382 CTGCTTA-CCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439
||| ||| ||||| | ||||| || | |||| | ||| | || | | || || ||
Sbjct 97805988 CTGTTTACCCTCT-ACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATT- 97806044
Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 114499
|| | ||| ||| ||||| || ||||| || ||||||||||||| | | ||
Sbjct 97806045 -----CCTGAGCGGCGGCCTGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 97806099
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 97806100 ACAGCGACGATGCAGTTTAG 97806119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406112342528764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |