Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq24 300 1e-76
seq1 143 2e-29
seq20 111 1e-19
seq2 98.7 8e-16
seq9 89.7 4e-13
seq4 84.2 2e-11
seq7 82.4 7e-11
>seq24
Length=155392059
Score = 300 bits (332), Expect = 1e-76
Identities = 527/758 (70%), Gaps = 11/758 (1%)
Strand=Plus/Plus
Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438
|| ||| || ||||| || || || || |||| || ||| || || ||||| | |
Sbjct 44583607 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44583666
Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498
|||||| | || | || | || ||||||||||| || || | | ||||| ||
Sbjct 44583667 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44583726
Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558
| | | ||| || | |||||||| | ||| | || | |||| || || ||||||||
Sbjct 44583727 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44583786
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| |
Sbjct 44583787 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 44583846
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
|||| || || ||||| ||||| | ||||| || ||||||||||| |||||||||||
Sbjct 44583847 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44583906
Query 4679 GGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737
|| || || ||||| | || ||| | ||| ||||||| |||||| |
Sbjct 44583907 TGCAGCGAAGGCTACAACACGTTCACCATAGGTAGC-CTCTTTGTCCCCAATCCAGCACA 44583965
Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AAATAATTT 4795
| ||||| | || ||||| || || || || || | || || || | | || ||
Sbjct 44583966 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44584024
Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854
||||| | |||| |||| || |||||||| || || || ||||||||||||||||
Sbjct 44584025 CCTTTTCT---TTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44584081
Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914
|||| ||||| || ||||| || || || || || || | |||||||| | ||||||
Sbjct 44584082 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44584141
Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974
| | ||||| || || || ||||| |||||||| || ||||| |||||||| ||
Sbjct 44584142 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44584201
Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034
||| |||||| |||||||| || || || ||||| | || |||||| | | |
Sbjct 44584202 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAATGT 44584261
Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094
| || | | || || || || ||||| || || || ||||| || || |||||
Sbjct 44584262 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44584321
Query 5095 ACCAAATATCAGGATACT-GAATCGGAAGTATGACAAA 5131
||| |||||| | |||| || ||||| ||||||||
Sbjct 44584322 GCCAGATATCATGGTACTCGACGGGGAAG-ATGACAAA 44584358
Score = 161 bits (178), Expect = 8e-35
Identities = 386/574 (67%), Gaps = 25/574 (4%)
Strand=Plus/Minus
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607
|| ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || |
Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963
Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667
|| ||||| | ||| || || ||||| ||||| ||||| || |||||||||||
Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903
Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT-GTCTTT 4726
||| ||| || |||||| ||| | || | || || | ||| | ||||||
Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGC--AT-GCAACACGTTCTCCATGGGTAACGTCTTT 143817846
Query 4727 ------AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780
|||||| || |||| || || ||||| || || || || || | ||
Sbjct 143817845 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 143817787
Query 4781 AGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTA 4836
|| | || | ||| |||| || || |||| ||||| ||||| || || |
Sbjct 143817786 GGCACTGAAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGA 143817733
Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896
| ||| |||||||||||||| |||||||||||||| || || || || ||||| |
Sbjct 143817732 GATTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 143817673
Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956
|||||| | ||||||| | | |||| ||| || |||||||| | || ||| || |
Sbjct 143817672 TTTCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 143817613
Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016
||| |||||||| || |||| || ||| |||||||| || || |||||||| ||
Sbjct 143817612 CACATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 143817553
Query 5017 TTTTCCAGTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074
|| ||||| | |||| || || | | || || || | | |||| || || |
Sbjct 143817552 CTTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAAC 143817495
Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108
|| |||| || ||||| |||||||||| ||
Sbjct 143817494 CTCTACTTTCTTTTACATTTTCCAAATATCATGA 143817461
>seq1
Length=229774977
Score = 143 bits (158), Expect = 2e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| || |||||||| || || || |||||||||||||||||| | ||||| || |||
Sbjct 140699698 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 140699757
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
|| || || | || || || | |||||||| | |||||||| | | ||||| ||
Sbjct 140699758 ATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 140699817
Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991
|| |||||||| |||||||| || ||||| |||||||| || |||| |||| | ||||||
Sbjct 140699818 ACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 140699877
Query 4992 AA 4993
||
Sbjct 140699878 AA 140699879
>seq20
Length=64411610
Score = 111 bits (122), Expect = 1e-19
Identities = 210/303 (69%), Gaps = 7/303 (2%)
Strand=Plus/Plus
Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825
|| || || ||||| || ||||| | | | ||||| || || || ||| || |||||
Sbjct 58280951 GCCCTTGTGAAAACGGACATTCAGACAGCGCTTCCTTCTGGATGTTATGGA-GAGTAGCT 58281009
Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885
|| || ||||| ||||| | ||||||||| | || || || || ||||| | |||| |
Sbjct 58281010 CCAAGGTCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGGAGCTGGTGTCACAGATGAA 58281069
Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942
|| ||||||||||| ||||| |||| | ||||||||| | |||||| | | |||
Sbjct 58281070 GATTATAGAGGAAATGTTGGTGTTGTACTCTTTAATTTTTGCAAAGAAAAGT-TTGAAGT 58281128
Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAAT-GCCCCAAAT 32001
|||||| || ||| | | || || || ||||| ||| || | || ||||
Sbjct 58281129 -CAAAAAAAGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTTATCCAGAAAT 58281187
Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061
||||| || | | | | ||| ||| ||||| || | ||| ||||| ||||||||
Sbjct 58281188 AGAAGAAGTTCAAGCTTTGGATGACACCAAAAGGGGTTCAGGAGGTTTTGGCTCTACCGG 58281247
Query 32062 AAA 32064
|||
Sbjct 58281248 AAA 58281250
>seq2
Length=114371477
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| |||||||| || | || ||||| | |||| || ||
Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| |||
Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333
Query 4692 AC 4693
||
Sbjct 10280332 AC 10280331
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
|| |||| || |||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 10278082 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 10278023
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||||| || || || || || || | |||||||| | |||||||| | | |||||
Sbjct 10278022 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 10277965
>seq9
Length=144709823
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| ||||| || || ||||||||||||||||| || || |
Sbjct 101037412 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 101037468
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| || ||||||| || || | ||||| || |||||||| || | ||| || |
Sbjct 101037469 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 101037528
Query 5041 TTAAATCAAC 5050
||| || ||
Sbjct 101037529 ATAAGTCGAC 101037538
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 101019760 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 101019819
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 101019820 ATAAAATCAAAAGGATT 101019836
>seq4
Length=205426864
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/156 (72%), Gaps = 6/156 (4%)
Strand=Plus/Minus
Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350
|||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || |
Sbjct 177695088 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 177695029
Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410
| | ||| || ||||||||||||||||||||| || || ||| |||| ||
Sbjct 177695028 CCTG---ACCCTATATTGTTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 177694972
Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446
|| || || || || || | |||||||| ||||||
Sbjct 177694971 GAATATGGACTCTATTCCATCTATCAAGGGGGAATA 177694936
>seq7
Length=173848474
Score = 82.4 bits (90), Expect = 7e-11
Identities = 94/125 (75%), Gaps = 1/125 (1%)
Strand=Plus/Minus
Query 31802 TCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGAC 31861
|| ||||| || ||| || ||| ||| | ||||| ||||| | ||||| ||||| ||
Sbjct 86593107 TCTGGGTGTTA-GGAAGAGTAGTTCCATGGTCTGGCTTGGCTGCAAAACATTTTATTGAT 86593049
Query 31862 GTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921
|| || || ||||| |||||| | | ||||||||||| ||||| ||| | ||||||
Sbjct 86593048 GTAGGAGCTGGTGTCATAGATGAAAATTATAGAGGAAATGTTGGTGTTGCACTATTTAAT 86592989
Query 31922 TTTGG 31926
|||||
Sbjct 86592988 TTTGG 86592984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426996127251242
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