Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq24 300 1e-76 seq1 143 2e-29 seq20 111 1e-19 seq2 98.7 8e-16 seq9 89.7 4e-13 seq4 84.2 2e-11 seq7 82.4 7e-11 >seq24 Length=155392059 Score = 300 bits (332), Expect = 1e-76 Identities = 527/758 (70%), Gaps = 11/758 (1%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || ||| || || ||||| | | Sbjct 44583607 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44583666 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || ||||||||||| || || | | ||||| || Sbjct 44583667 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44583726 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | ||| || | |||||||| | ||| | || | |||| || || |||||||| Sbjct 44583727 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44583786 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| | Sbjct 44583787 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAG 44583846 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || ||||||||||| ||||||||||| Sbjct 44583847 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44583906 Query 4679 GGCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 || || || ||||| | || ||| | ||| ||||||| |||||| | Sbjct 44583907 TGCAGCGAAGGCTACAACACGTTCACCATAGGTAGC-CTCTTTGTCCCCAATCCAGCACA 44583965 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AAATAATTT 4795 | ||||| | || ||||| || || || || || | || || || | | || || Sbjct 44583966 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGAGAAATT 44584024 Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 ||||| | |||| |||| || |||||||| || || || |||||||||||||||| Sbjct 44584025 CCTTTTCT---TTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44584081 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 44584082 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44584141 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | ||||| || || || ||||| |||||||| || ||||| |||||||| || Sbjct 44584142 TTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44584201 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||| |||||| |||||||| || || || ||||| | || |||||| | | | Sbjct 44584202 CCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAATGT 44584261 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | || | | || || || || ||||| || || || ||||| || || ||||| Sbjct 44584262 CCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCT 44584321 Query 5095 ACCAAATATCAGGATACT-GAATCGGAAGTATGACAAA 5131 ||| |||||| | |||| || ||||| |||||||| Sbjct 44584322 GCCAGATATCATGGTACTCGACGGGGAAG-ATGACAAA 44584358 Score = 161 bits (178), Expect = 8e-35 Identities = 386/574 (67%), Gaps = 25/574 (4%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT-GTCTTT 4726 ||| ||| || |||||| ||| | || | || || | ||| | |||||| Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGC--AT-GCAACACGTTCTCCATGGGTAACGTCTTT 143817846 Query 4727 ------AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 |||||| || |||| || || ||||| || || || || || | || Sbjct 143817845 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 143817787 Query 4781 AGCGTTAAATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTA 4836 || | || | ||| |||| || || |||| ||||| ||||| || || | Sbjct 143817786 GGCACTGAAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGA 143817733 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 | ||| |||||||||||||| |||||||||||||| || || || || ||||| | Sbjct 143817732 GATTATTTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 143817673 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 |||||| | ||||||| | | |||| ||| || |||||||| | || ||| || | Sbjct 143817672 TTTCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 143817613 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTT 5016 ||| |||||||| || |||| || ||| |||||||| || || |||||||| || Sbjct 143817612 CACATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 143817553 Query 5017 TTTTCCAGTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 || ||||| | |||| || || | | || || || | | |||| || || | Sbjct 143817552 CTTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAAC 143817495 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 || |||| || ||||| |||||||||| || Sbjct 143817494 CTCTACTTTCTTTTACATTTTCCAAATATCATGA 143817461 >seq1 Length=229774977 Score = 143 bits (158), Expect = 2e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || || |||||||||||||||||| | ||||| || ||| Sbjct 140699698 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 140699757 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || | || || || | |||||||| | |||||||| | | ||||| || Sbjct 140699758 ATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 140699817 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| |||||||| || ||||| |||||||| || |||| |||| | |||||| Sbjct 140699818 ACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 140699877 Query 4992 AA 4993 || Sbjct 140699878 AA 140699879 >seq20 Length=64411610 Score = 111 bits (122), Expect = 1e-19 Identities = 210/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Plus Query 31766 GCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCT 31825 || || || ||||| || ||||| | | | ||||| || || || ||| || ||||| Sbjct 58280951 GCCCTTGTGAAAACGGACATTCAGACAGCGCTTCCTTCTGGATGTTATGGA-GAGTAGCT 58281009 Query 31826 CCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCA 31885 || || ||||| ||||| | ||||||||| | || || || || ||||| | |||| | Sbjct 58281010 CCAAGGTCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGGAGCTGGTGTCACAGATGAA 58281069 Query 31886 GACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGT 31942 || ||||||||||| ||||| |||| | ||||||||| | |||||| | | ||| Sbjct 58281070 GATTATAGAGGAAATGTTGGTGTTGTACTCTTTAATTTTTGCAAAGAAAAGT-TTGAAGT 58281128 Query 31943 ATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAAT-GCCCCAAAT 32001 |||||| || ||| | | || || || ||||| ||| || | || |||| Sbjct 58281129 -CAAAAAAAGGTGATCGAATTGCACAGCTCATTTGTGAACGGATTTTTTTATCCAGAAAT 58281187 Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061 ||||| || | | | | ||| ||| ||||| || | ||| ||||| |||||||| Sbjct 58281188 AGAAGAAGTTCAAGCTTTGGATGACACCAAAAGGGGTTCAGGAGGTTTTGGCTCTACCGG 58281247 Query 32062 AAA 32064 ||| Sbjct 58281248 AAA 58281250 >seq2 Length=114371477 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| |||||||| || | || ||||| | |||| || || Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333 Query 4692 AC 4693 || Sbjct 10280332 AC 10280331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 10278082 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 10278023 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 10278022 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 10277965 >seq9 Length=144709823 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 101037412 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 101037468 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 101037469 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 101037528 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 101037529 ATAAGTCGAC 101037538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 101019760 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 101019819 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 101019820 ATAAAATCAAAAGGATT 101019836 >seq4 Length=205426864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 177695088 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 177695029 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | | ||| || ||||||||||||||||||||| || || ||| |||| || Sbjct 177695028 CCTG---ACCCTATATTGTTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 177694972 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446 || || || || || || | |||||||| |||||| Sbjct 177694971 GAATATGGACTCTATTCCATCTATCAAGGGGGAATA 177694936 >seq7 Length=173848474 Score = 82.4 bits (90), Expect = 7e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 31802 TCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAAACACTTTATCGAC 31861 || ||||| || ||| || ||| ||| | ||||| ||||| | ||||| ||||| || Sbjct 86593107 TCTGGGTGTTA-GGAAGAGTAGTTCCATGGTCTGGCTTGGCTGCAAAACATTTTATTGAT 86593049 Query 31862 GTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAAT 31921 || || || ||||| |||||| | | ||||||||||| ||||| ||| | |||||| Sbjct 86593048 GTAGGAGCTGGTGTCATAGATGAAAATTATAGAGGAAATGTTGGTGTTGCACTATTTAAT 86592989 Query 31922 TTTGG 31926 ||||| Sbjct 86592988 TTTGG 86592984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426996127251242