Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq24 403 2e-107 seq1 138 2e-27 seq2 125 1e-23 seq12 105 9e-18 seq20 84.2 3e-11 >seq24 Length=155392059 Score = 403 bits (446), Expect = 2e-107 Identities = 655/939 (70%), Gaps = 13/939 (1%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| ||| ||| | |||| ||| |||| | || |||| ||||| Sbjct 44583426 GTTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCC 44583485 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | |||| || || ||||| ||| || ||| || Sbjct 44583486 CATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAAT 44583540 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| ||| |||| |||||||| | || | ||| || |||| || | ||| Sbjct 44583541 ATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAG 44583600 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || ||||| ||||| || || || || ||| ||||| | |||||||| || || Sbjct 44583601 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44583660 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || || || | ||||| || || || |||||||| || ||||||| | || Sbjct 44583661 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44583720 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | | || | ||||| |||| | | || ||||| ||||| || || || Sbjct 44583721 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGC 44583780 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||||||| || | ||| |||||||| ||||| | ||| || ||||| ||||| || || Sbjct 44583781 AAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44583840 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| |||||||| ||||| | || ||||| ||||||||||| ||||| Sbjct 44583841 CATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44583900 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCA 48322 |||||| || || || || || | || || || | || || |||| ||||| Sbjct 44583901 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44583960 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | |||||||| ||| |||||| ||||||||||| | ||| || ||||| ||||| Sbjct 44583961 GCACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAG 44584019 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | ||||| ||| |||||| | |||||| || || | |||||||||||||| || Sbjct 44584020 AAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44584079 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| || || || || || || || ||||| | |||||||| ||||| || Sbjct 44584080 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44584139 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 | |||||| || ||||||| ||||||||||| |||||||| || ||||| || Sbjct 44584140 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44584199 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 | | ||||| ||||||||| | || | || || | | ||||| || Sbjct 44584200 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAAT 44584259 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || || || | || || || || | ||||| || || ||||| || || |||||||| Sbjct 44584260 GTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44584319 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| |||||| ||| | || ||||| || ||||| Sbjct 44584320 CTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44584358 Score = 206 bits (228), Expect = 4e-48 Identities = 386/563 (69%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| | ||| || | ||| ||||| || ||||| | ||| || ||||||||||| Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| |||| |||||||| ||||| || ||||| ||||||||||| Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC----TCTCC----GTAACTGGCTTCGT 48312 ||| ||| || ||||| || | | | | ||||| ||||| | ||| || Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAAC-GTCTTTGT 143817844 Query 48313 TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 | ||||| | ||||| | ||||||||||| |||| |||||| ||||| || | Sbjct 143817843 TCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGG 143817785 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 || | |||||||| | |||| ||| ||||||||| || || || || | ||| ||| Sbjct 143817784 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA--TATGTGTCAATAAGGAGATTAT 143817727 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||| || || || ||||| || || || || || || || || || | ||||| Sbjct 143817726 TTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 143817667 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 | ||| | || || | |||| |||| |||| || |||| || ||| ||||||| | Sbjct 143817666 TAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATG 143817607 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | ||||| || || | | ||| ||||||||| ||| | | |||| | || Sbjct 143817606 CTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCC 143817547 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| || || || || | || || || | || |||| || || ||||| ||| Sbjct 143817546 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 143817487 Query 48673 TTTTATACATATTCCATATATCA 48695 | || ||||| ||||| |||||| Sbjct 143817486 TCTTTTACATTTTCCAAATATCA 143817464 >seq1 Length=229774977 Score = 138 bits (152), Expect = 2e-27 Identities = 173/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||||| |||||||| |||||||| |||||| || | || |||||||| | Sbjct 140699632 GCCCAATTTGCCTTCTTG---ACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCC 140699685 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||| ||| |||||| | |||||| || || | |||||||||||||| || || | Sbjct 140699686 CTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTG 140699745 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 ||||| || || || || || | || ||||| | |||||||| ||||| || || Sbjct 140699746 TTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGG 140699805 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | |||||| || |||| || ||||||||||| |||||||| || ||||| || || Sbjct 140699806 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 140699861 >seq2 Length=114371477 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| |||||||||||||| || ||||| ||||| ||||| ||| Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | ||| ||||| || |||||||| |||||||| || || ||||| || Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10280334 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||| | |||||| || || | ||||||||||||||| || || || | Sbjct 10278090 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 10278031 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 10278030 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 10277976 >seq12 Length=134183262 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 4105337 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 4105278 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 4105277 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 4105218 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 4105217 TTTCTTATACCAT 4105205 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| |||||||| | |||||||| ||||| Sbjct 4085399 GTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 4085340 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| |||| || ||||| || || || || || | ||| | ||||||| Sbjct 4085339 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 4085280 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 4085279 ATATGTTGTGGTCTTTCAGCC 4085259 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| ||||||| || ||||||| || | || Sbjct 4094691 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 4094632 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 4094631 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 4094572 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 4094571 TCCAGGTAAATAGC 4094558 >seq20 Length=64411610 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||| || || ||||| ||| ||| | | |||| || |||| | || ||| ||||| Sbjct 58281248 TCCGGTAGAGCCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCT 58281191 Query 45934 TTCAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | | || |||||| | | | |||| | | || || || || |||| |||||| | || Sbjct 58281190 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 58281131 Query 45993 T-ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAAT 46051 | | |||||| | ||||| | | ||| | || | || |||| | |||||||||| Sbjct 58281130 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 58281071 Query 46052 CTTCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAG 46108 |||||||| | || || |||| ||||| | | |||| || || ||||| || | Sbjct 58281070 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 58281011 Query 46109 GAGCTATTCTTCCATAACA 46127 |||||| || ||||||||| Sbjct 58281010 GAGCTACTC-TCCATAACA 58280993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694579587159360