Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq24 398 1e-105 seq1 131 2e-25 seq2 125 1e-23 seq12 105 1e-17 seq9 102 1e-16 seq20 84.2 3e-11 >seq24 Length=155392059 Score = 398 bits (440), Expect = 1e-105 Identities = 655/938 (70%), Gaps = 20/938 (2%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| ||||| ||| ||| | |||| ||| |||| | | ||||| |||||||| Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || || ||||| | |||| || || ||||| ||| || ||| ||||| | Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44583545 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 || |||| ||||| || | || ||| || |||| || | ||| || | Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516 |||| ||||| || || || || || || | ||||| | |||||||| || |||| Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGTGCAATTCATCCCAATGA 44583662 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575 | || || || | ||||| || || || |||||||| || ||||||| |||| || Sbjct 44583663 GCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATT-GATAATT 44583721 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | | ||| | ||||| |||| || | || ||||| ||||| || || ||| Sbjct 44583722 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44583781 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | || |||||||| ||||| | ||| || ||||| ||||| |||||| Sbjct 44583782 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44583841 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || ||||| || || |||||||| ||||| | || ||||| ||||||||||| |||||| Sbjct 44583842 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44583901 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCAC 46812 ||||| || ||||| || |||| | || || || | || || || | |||||| Sbjct 44583902 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAG 44583961 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||||| ||| ||||| ||||||||||| | ||| || ||||| |||||| Sbjct 44583962 CACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGA 44584020 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || | ||||| | |||||| | || || || || | |||||||||||||| ||| Sbjct 44584021 AATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 44584080 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || |||||||| || || || || || || || ||||| | ||||| |||||||| || Sbjct 44584081 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACT 44584140 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 | | |||||| || |||||| ||||| ||||| |||||||| || ||||| || Sbjct 44584141 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 44584200 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 ||| ||||| ||||||||| | || |||| || | | ||||| || Sbjct 44584201 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAATG 44584260 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || || || | || || || || | |||||||| || ||||| || || |||||||| Sbjct 44584261 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44584320 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | ||| |||||| | || | || || || || ||||| Sbjct 44584321 TGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44584358 Score = 215 bits (238), Expect = 7e-51 Identities = 392/566 (69%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| | ||| || | || ||||| || ||||| | ||| || ||||||||||| Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||| | || |||||||| ||||| || ||||| ||||||||||| Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903 Query 46750 ATGCCTTCTAC--AGCC----GC-GAATGCGACAAG-TCTCTCTCCGTAACTGGCATCAT 46801 ||| ||| || || | || | |||| ||| | |||| | ||||| | | | | Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAAC-GTCTTTGT 143817844 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 | |||||| | ||||| | ||||| ||||| |||| |||||| ||||| || | Sbjct 143817843 TCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGG 143817785 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 || | |||||||| | |||| | |||||||| |||||| || || | ||| ||| Sbjct 143817784 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTAT 143817727 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||| ||||| |||||||| ||||| || || || || || || || | ||| | Sbjct 143817726 TTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 143817667 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 ||||| | || ||| | |||| |||| ||| || |||| | ||| ||||||| | Sbjct 143817666 TAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATG 143817607 Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC 47101 | ||||| || |||| | ||| ||||||||| ||| || | |||| | || Sbjct 143817606 CTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCC 143817547 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 ||| || || || || | || || || | || ||||||| || ||||| ||| Sbjct 143817546 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 143817487 Query 47162 TTTTATACATATTCCATATATCACGA 47187 | || ||||| ||||| |||||| || Sbjct 143817486 TCTTTTACATTTTCCAAATATCATGA 143817461 >seq1 Length=229774977 Score = 131 bits (144), Expect = 2e-25 Identities = 191/269 (71%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||||| ||||| ||| |||||||| |||||| || | || |||||||| | Sbjct 140699632 GCCCAATTTGCCTT---CTTGACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCC 140699685 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 |||| | |||||| | || || || || | |||||||||||||| ||||| || Sbjct 140699686 CTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTG 140699745 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 ||||| || || || || || | || ||||| | ||||| |||||||| || ||| Sbjct 140699746 TTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGG 140699805 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 | |||||| || ||| || ||||| ||||| |||||||| || ||||| || |||| Sbjct 140699806 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGA 140699865 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGT 47087 ||| | ||||||| | || ||||| Sbjct 140699866 ACACGGGATATAAAATCACTCTCCTCGGT 140699894 >seq2 Length=114371477 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| |||||||||||||| |||||||| ||||| || || ||| Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| || |||||||| |||||||| || || || || || Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333 Query 46774 ACAA 46777 |||| Sbjct 10280332 ACAA 10280329 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || || | ||||||||||||||| ||||| |||||||| || || Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961 >seq12 Length=134183262 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 4105337 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 4105278 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 4105277 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 4105218 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 4105217 TTTCTTATACCAT 4105205 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 4079610 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGATA 4079551 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 4079550 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 4079491 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || | ||||| || |||||||||| Sbjct 4079490 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 4079445 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || || |||||||| ||||| | |||||||| ||||| Sbjct 4085399 GTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 4085340 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| |||| || || || || || || || |||| || | ||||||| Sbjct 4085339 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 4085280 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 4085279 ATATGTTGTGGTCTTTC 4085263 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 4095144 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 4095085 Query 76580 CACTC 76584 || || Sbjct 4095084 CAGTC 4095080 >seq9 Length=144709823 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| || ||||| || || | ||| | Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| | ||||||||||| || || | Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 101030461 CCACCACTCTTTCCCC 101030476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 101043662 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 101043721 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||| ||||| || ||||| Sbjct 101043722 GTACTGGATTGGAAAGATGACAAA 101043745 >seq20 Length=64411610 Score = 84.2 bits (92), Expect = 3e-11 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Minus Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420 ||| || || ||||| ||| ||| | | || ||||| ||| | || ||| ||||| Sbjct 58281248 TCCGGTAGAGCCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCT 58281191 Query 44421 TCTAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATT 44479 |||| || |||||| | | | |||| | | || || || || |||| ||||||| | || Sbjct 58281190 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 58281131 Query 44480 T-ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAAT 44538 | | || ||| | ||||| | | ||| | | | || |||| || || ||||||| Sbjct 58281130 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 58281071 Query 44539 CTTCATCTATTACTCCACCTCCCACATCAATA---CCTTTTAGAGAAAGACCCGATCTAG 44595 |||||||| | || ||| |||| ||||||| | |||| || | || || || | Sbjct 58281070 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 58281011 Query 44596 GCGCTATTCTTCCATAACA 44614 | |||| || ||||||||| Sbjct 58281010 GAGCTACTC-TCCATAACA 58280993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712842841399680