Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq24 398 1e-105
seq1 131 2e-25
seq2 125 1e-23
seq12 105 1e-17
seq9 102 1e-16
seq20 84.2 3e-11
>seq24
Length=155392059
Score = 398 bits (440), Expect = 1e-105
Identities = 655/938 (70%), Gaps = 20/938 (2%)
Strand=Plus/Plus
Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339
|||| ||||| ||| ||| | |||| ||| |||| | | ||||| ||||||||
Sbjct 44583431 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44583490
Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399
| || || || ||||| | |||| || || ||||| ||| || ||| ||||| |
Sbjct 44583491 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44583545
Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459
|| |||| ||||| || | || ||| || |||| || | ||| || |
Sbjct 44583546 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44583605
Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTATGA 46516
|||| ||||| || || || || || || | ||||| | |||||||| || ||||
Sbjct 44583606 GTCTGTCTGCCACAAACTCAATGTA---TTGCTTCATTAGAGTGCAATTCATCCCAATGA 44583662
Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TT 46575
| || || || | ||||| || || || |||||||| || ||||||| |||| ||
Sbjct 44583663 GCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATT-GATAATT 44583721
Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635
|| | | ||| | ||||| |||| || | || ||||| ||||| || || |||
Sbjct 44583722 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44583781
Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695
|||||||| || | || |||||||| ||||| | ||| || ||||| ||||| ||||||
Sbjct 44583782 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44583841
Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755
|| ||||| || || |||||||| ||||| | || ||||| ||||||||||| ||||||
Sbjct 44583842 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44583901
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCAC 46812
||||| || ||||| || |||| | || || || | || || || | ||||||
Sbjct 44583902 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAG 44583961
Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872
| |||||||| ||| ||||| ||||||||||| | ||| || ||||| ||||||
Sbjct 44583962 CACAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGA 44584020
Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932
|| | ||||| | |||||| | || || || || | |||||||||||||| |||
Sbjct 44584021 AATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 44584080
Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992
|| |||||||| || || || || || || || ||||| | ||||| |||||||| ||
Sbjct 44584081 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACT 44584140
Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052
| | |||||| || |||||| ||||| ||||| |||||||| || ||||| ||
Sbjct 44584141 ATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 44584200
Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112
||| ||||| ||||||||| | || |||| || | | ||||| ||
Sbjct 44584201 ACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGAATG 44584260
Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172
|| || || | || || || || | |||||||| || ||||| || || ||||||||
Sbjct 44584261 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44584320
Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
| ||| |||||| | || | || || || || |||||
Sbjct 44584321 TGCCAGATATCATGGTACTCGACGGGGAAGATGACAAA 44584358
Score = 215 bits (238), Expect = 7e-51
Identities = 392/566 (69%), Gaps = 12/566 (2%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| ||||| | ||| || | || ||||| || ||||| | ||| || |||||||||||
Sbjct 143818022 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 143817963
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|||||||| ||||| | || |||||||| ||||| || ||||| |||||||||||
Sbjct 143817962 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 143817903
Query 46750 ATGCCTTCTAC--AGCC----GC-GAATGCGACAAG-TCTCTCTCCGTAACTGGCATCAT 46801
||| ||| || || | || | |||| ||| | |||| | ||||| | | | |
Sbjct 143817902 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAAC-GTCTTTGT 143817844
Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861
| |||||| | ||||| | ||||| ||||| |||| |||||| ||||| || |
Sbjct 143817843 TCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCAATGG 143817785
Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921
|| | |||||||| | |||| | |||||||| |||||| || || | ||| |||
Sbjct 143817784 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTAT 143817727
Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981
||||| ||||| |||||||| ||||| || || || || || || || | ||| |
Sbjct 143817726 TTATTTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 143817667
Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041
||||| | || ||| | |||| |||| ||| || |||| | ||| ||||||| |
Sbjct 143817666 TAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATG 143817607
Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC 47101
| ||||| || |||| | ||| ||||||||| ||| || | |||| | ||
Sbjct 143817606 CTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCCC 143817547
Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161
||| || || || || | || || || | || ||||||| || ||||| |||
Sbjct 143817546 AGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACTT 143817487
Query 47162 TTTTATACATATTCCATATATCACGA 47187
| || ||||| ||||| |||||| ||
Sbjct 143817486 TCTTTTACATTTTCCAAATATCATGA 143817461
>seq1
Length=229774977
Score = 131 bits (144), Expect = 2e-25
Identities = 191/269 (71%), Gaps = 6/269 (2%)
Strand=Plus/Plus
Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878
||||||| ||||| ||| |||||||| |||||| || | || |||||||| |
Sbjct 140699632 GCCCAATTTGCCTT---CTTGACACAAGG---TGTTTCAATGGTGTTGAAGAGAAATTCC 140699685
Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938
|||| | |||||| | || || || || | |||||||||||||| ||||| ||
Sbjct 140699686 CTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTG 140699745
Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998
||||| || || || || || | || ||||| | ||||| |||||||| || |||
Sbjct 140699746 TTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGG 140699805
Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058
| |||||| || ||| || ||||| ||||| |||||||| || ||||| || ||||
Sbjct 140699806 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGA 140699865
Query 47059 ACATGTTTAATAAAATATTTTTCATCGGT 47087
||| | ||||||| | || |||||
Sbjct 140699866 ACACGGGATATAAAATCACTCTCCTCGGT 140699894
>seq2
Length=114371477
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| |||||||||||||| |||||||| ||||| || || |||
Sbjct 10280452 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10280393
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | ||| ||||| || |||||||| |||||||| || || || || ||
Sbjct 10280392 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10280333
Query 46774 ACAA 46777
||||
Sbjct 10280332 ACAA 10280329
Score = 86.0 bits (94), Expect = 9e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||| | || || || || | ||||||||||||||| ||||| |||||||| || ||
Sbjct 10278080 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10278021
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| || || || || ||||| | ||||| |||||||| || ||| | |||||| ||
Sbjct 10278020 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10277961
>seq12
Length=134183262
Score = 105 bits (116), Expect = 1e-17
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 4105337 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 4105278
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| || |||| || |||||||| ||||| || ||||| || || | | ||||||
Sbjct 4105277 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 4105218
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 4105217 TTTCTTATACCAT 4105205
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || || || || || || || || ||
Sbjct 4079610 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGATA 4079551
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| |
Sbjct 4079550 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 4079491
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | || || || || | || | ||||| || ||||||||||
Sbjct 4079490 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 4079445
Score = 89.7 bits (98), Expect = 7e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || || || |||||||| ||||| | |||||||| |||||
Sbjct 4085399 GTACCAGCATTGAAGAGAGTGGGCGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 4085340
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||||||||| |||| || || || || || || || |||| || | |||||||
Sbjct 4085339 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 4085280
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 4085279 ATATGTTGTGGTCTTTC 4085263
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||
Sbjct 4095144 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 4095085
Query 76580 CACTC 76584
|| ||
Sbjct 4095084 CAGTC 4095080
>seq9
Length=144709823
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | || || ||||| ||||| || ||||| || || | ||| |
Sbjct 101030341 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 101030400
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| | ||||||||||| || || |
Sbjct 101030401 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 101030460
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 101030461 CCACCACTCTTTCCCC 101030476
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 101043662 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 101043721
Query 47187 ATATTGGATCGGAAAAATAACAAA 47210
|| ||||| ||||| || |||||
Sbjct 101043722 GTACTGGATTGGAAAGATGACAAA 101043745
>seq20
Length=64411610
Score = 84.2 bits (92), Expect = 3e-11
Identities = 178/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420
||| || || ||||| ||| ||| | | || ||||| ||| | || ||| |||||
Sbjct 58281248 TCCGGTAGAGCCAAAACCTCCTGAAC--CCCTTTTGGTGTCATCCAAAGCTTGAACTTCT 58281191
Query 44421 TCTAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATT 44479
|||| || |||||| | | | |||| | | || || || || |||| ||||||| | ||
Sbjct 58281190 TCTATTTCTGGATAAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCTTTTTT 58281131
Query 44480 T-ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAAT 44538
| | || ||| | ||||| | | ||| | | | || |||| || || |||||||
Sbjct 58281130 TGACTTCAAACTTTTCTTTGCAAAAATTAAAGAGTACAACACCAACATTTCCTCTATAAT 58281071
Query 44539 CTTCATCTATTACTCCACCTCCCACATCAATA---CCTTTTAGAGAAAGACCCGATCTAG 44595
|||||||| | || ||| |||| ||||||| | |||| || | || || || |
Sbjct 58281070 CTTCATCTGTGACACCAGCTCCTACATCAACAAAGTGTTTTGCAGCCAAGCCAGACCTTG 58281011
Query 44596 GCGCTATTCTTCCATAACA 44614
| |||| || |||||||||
Sbjct 58281010 GAGCTACTC-TCCATAACA 58280993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712842841399680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |