Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1 174 2e-38
seq10 129 8e-25
seq2750 93.3 6e-14
>seq1
Length=229774977
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||| ||
Sbjct 166360508 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 166360567
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| |||||
Sbjct 166360568 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 166360627
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
||| || || ||||| | || | | || || |||| ||||| |||||||| |
Sbjct 166360628 AACTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 166360687
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| |||||||| || || ||||| ||||
Sbjct 166360688 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 166360736
Score = 168 bits (186), Expect = 1e-36
Identities = 231/323 (72%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323
|||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| |
Sbjct 166358476 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 166358535
Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383
|||| ||||||||||| | || | |||| ||| || ||||| ||||| || ||
Sbjct 166358536 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 166358595
Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443
||||| ||||||||||| | || || || || || || |||| || ||||| | ||||
Sbjct 166358596 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 166358655
Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503
|| || || || | || | ||| ||||||| |||||||| | || || ||||||||
Sbjct 166358656 AATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGCCGAGGCTTTTCT 166358715
Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563
|||| | | | |||||||||||||| |||| ||| || || || || | ||
Sbjct 166358716 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 166358775
Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586
|||| || ||||||||||||||
Sbjct 166358776 GCAGACATTTCCTTTTCTCCTGT 166358798
Score = 122 bits (134), Expect = 1e-22
Identities = 148/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||| || || ||||| || || |||||| ||| ||| | ||
Sbjct 166361661 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 166361720
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| |||||||| || ||| |||| || |||||||| | ||| | ||||||||||||
Sbjct 166361721 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGAGCCCTGGGGATC 166361780
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | ||||| ||||||||||| | | ||| || ||||
Sbjct 166361781 AGGGATGAACTTTCTTCTTAGAAGTAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 166361840
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
||||||||| || |||||
Sbjct 166361841 CTTTTTACCTGAAAAATGAGAA 166361862
Score = 104 bits (114), Expect = 3e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
||||||||||| || | ||||| || || || | ||| || ||||| || || |
Sbjct 166362275 TCACCTTTGACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTAGTA 166362334
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| |
Sbjct 166362335 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAAGTT 166362394
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| || ||||||||||||| ||||| ||||
Sbjct 166362395 GGTGGACTGTCAATCAAATGTGATCTGGCTGA 166362426
Score = 87.8 bits (96), Expect = 3e-12
Identities = 138/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || |
Sbjct 166359914 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 166359973
Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061
| | ||| || |||||||||| || ||| | |||| || || | || ||| |
Sbjct 166359974 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 166360031
Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121
||| | || |||| || | |||||||||||| | ||||||| || | | ||||
Sbjct 166360032 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAATTCAGCAGCAATAC 166360091
Query 9122 GATTTTGGTACTGGAA 9137
||||||| ||||||||
Sbjct 166360092 GATTTTGATACTGGAA 166360107
>seq10
Length=138149186
Score = 129 bits (142), Expect = 8e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||||||||| || ||||| || ||||| || ||||| |||||||||||| |||| |
Sbjct 121858404 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 121858345
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
| |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || |
Sbjct 121858344 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 121858285
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||| | ||| ||| || |||||| | | | ||| | ||| | |||||
Sbjct 121858284 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCAGGGTAGAACTCCA 121858225
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || | |||||| || | || | || || || |||||||| ||||||
Sbjct 121858224 ACGCATCAATGTCTCCATACAATTCCTCCAACTCTGCTGCCATCTCCTTCTCTCCT 121858169
Score = 98.7 bits (108), Expect = 1e-15
Identities = 178/259 (69%), Gaps = 10/259 (4%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || || |||||||| || ||||| || | ||| || ||
Sbjct 121849804 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAAAGCTGCTCATCGCCCCAGGTGGGGTGC 121849745
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | ||||||| ||||| |||| |
Sbjct 121849744 TCAGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGTAGCCAGAGCGTGGCATACAGC 121849685
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
||||||||||| | ||| ||||| |||| || || ||||||| | | | | ||||
Sbjct 121849684 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA---TCTGGCTCTGGGGC 121849628
Query 9412 -----ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466
| |||| || ||| ||| ||| | | |||| |||||||| || ||||
Sbjct 121849627 GGGATGCCTCGG--GGGTAGTGCATCAACACAGGCGCCTCTTCTACCGAGGGCGGGTACA 121849570
Query 9467 TTTCACCGTCAATCATCTG 9485
|||| ||||| | || |||
Sbjct 121849569 TTTCTCCGTCCAGCACCTG 121849551
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Minus
Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704
|| || |||||||| |||| | || |||||| | || || || |||| | |||
Sbjct 121847619 GTACTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 121847562
Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 121847561 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 121847502
Query 9765 GATCGGGAGTGAAGGTCCTCC 9785
| || || |||| ||||||
Sbjct 121847501 GGTCAGGTATGAACTTCCTCC 121847481
>seq2750
Length=44035
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 122970 GACGAAATGAAGATGATCTTGGTGGTGTTTTGCGCCAGAAAACCCAGGATGGTGTTGAAG 123029
||||| |||||||||||||||| | || || || ||| |||||||| | | |
Sbjct 20501 GACGAGATGAAGATGATCTTGGCGTCCTTCTGAAGCATAAAGCCCAGGATCGCCGGCAGG 20442
Query 123030 GCCTCCTTCTTGATGAAGTGCGCCTCGTCGACCAGCAGGAGGTGGAAATTCTGTCCGCGA 123089
|||||||||||||| |||| ||||| || || | || |||||| || |||| || |||
Sbjct 20441 GCCTCCTTCTTGATAAAGTTGGCCTCATCCACAAACAAGAGGTGAAATGTCTGCCCCCGA 20382
Query 123090 ATGCTCTGA 123098
|||||||||
Sbjct 20381 ATGCTCTGA 20373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716784735096960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |