Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18]
10,274 sequences; 3,286,643,896 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2 95.1 1e-14
seq9876 86.0 6e-12
seq15 86.0 6e-12
seq3 86.0 6e-12
>seq2
Length=114371477
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || ||
Sbjct 110580044 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 110579985
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || || || | ||| ||||| | || | || ||||| ||| |
Sbjct 110579984 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 110579925
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||||| | ||||| || | ||||||||| | || || || ||
Sbjct 110579924 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 110579865
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || ||||| |||||||| ||
Sbjct 110579864 CCGGTAAGGGTTTTCACGAAGATCTGCATTTT 110579833
>seq9876
Length=376000
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/211 (70%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||||||||| ||| | ||||| || || ||||| | || ||
Sbjct 278390 ACCAGGTGCAGGGTCGACTCCTTCTGGATGCTGTAGTCAGAAAGAGTGCGGCCATCTTCC 278331
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772
| || |||||| || || || || | ||| || || || ||| | || || | |||
Sbjct 278330 AACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTCATCCTG 278271
Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
||| || |||| || | | ||||| || | ||||||||||| || || || |
Sbjct 278270 GATCTTG-GCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 278212
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || ||||| ||||| ||||| ||||||||
Sbjct 278211 TTCCGGTCAGGGTCTTCACGAAGATCTGCAT 278181
>seq15
Length=107357366
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712
||||| ||||| ||| ||| ||||| ||||||||||| || || || || | || ||
Sbjct 20294780 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTC 20294721
Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772
| ||| ||| | |||||||| |||| ||||| | || | || |||||||| | |
Sbjct 20294720 CAACTGTTTGTTCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGT-CGT 20294662
Query 41773 GATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831
| | || |||| || ||| ||||| || | || ||||| | || || ||||
Sbjct 20294661 GGATCTTGGCTTTGACATTTTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTT 20294602
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || || |||||||| | ||||||||
Sbjct 20294601 TGCCTGTGAGGGTCTTTACAGAGATCTGCAT 20294571
>seq3
Length=247869975
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| || ||||| || ||| ||||| ||||||||||| || | ||||| || || ||
Sbjct 140398657 ACTAGGTGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAATGAGTGCGGTCATCTTCC 140398716
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
| ||||||| | || || || || | ||| ||||||| || || || ||||| ||| |
Sbjct 140398717 ACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTAATGCCTTCCTTATCCTGG 140398776
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||||| | ||||| || | |||||| || | | || || ||
Sbjct 140398777 ATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATGGTCTTG 140398836
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
| || || ||||| ||||| |||||||| ||
Sbjct 140398837 CTGGTAAGGGTCTTCACGAAGATCTGCATTTT 140398868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462244628608800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |