Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20paniscus_20[refseq_20GCF_5F000258655.2_202015-08-18] 10,274 sequences; 3,286,643,896 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 seq9876 86.0 6e-12 seq15 86.0 6e-12 seq3 86.0 6e-12 >seq2 Length=114371477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 110580044 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 110579985 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | || | || ||||| ||| | Sbjct 110579984 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGG 110579925 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||| | || || || || Sbjct 110579924 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 110579865 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || ||||| |||||||| || Sbjct 110579864 CCGGTAAGGGTTTTCACGAAGATCTGCATTTT 110579833 >seq9876 Length=376000 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||| | ||||| || || ||||| | || || Sbjct 278390 ACCAGGTGCAGGGTCGACTCCTTCTGGATGCTGTAGTCAGAAAGAGTGCGGCCATCTTCC 278331 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCAT 41772 | || |||||| || || || || | ||| || || || ||| | || || | ||| Sbjct 278330 AACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTCATCCTG 278271 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||| || | | ||||| || | ||||||||||| || || || | Sbjct 278270 GATCTTG-GCTTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 278212 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| ||||| ||||| |||||||| Sbjct 278211 TTCCGGTCAGGGTCTTCACGAAGATCTGCAT 278181 >seq15 Length=107357366 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| ||| ||| ||||| ||||||||||| || || || || | || || Sbjct 20294780 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGAAAGAGTACGGCCATCCTC 20294721 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||| ||| | |||||||| |||| ||||| | || | || |||||||| | | Sbjct 20294720 CAACTGTTTGTTCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGT-CGT 20294662 Query 41773 GATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | | || |||| || ||| ||||| || | || ||||| | || || |||| Sbjct 20294661 GGATCTTGGCTTTGACATTTTCACTGGTGTCACTTGGCTGGACCTCAAGGGTGATGGTTT 20294602 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || |||||||| | |||||||| Sbjct 20294601 TGCCTGTGAGGGTCTTTACAGAGATCTGCAT 20294571 >seq3 Length=247869975 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||| ||||| ||||||||||| || | ||||| || || || Sbjct 140398657 ACTAGGTGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGAATGAGTGCGGTCATCTTCC 140398716 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||||| | || || || || | ||| ||||||| || || || ||||| ||| | Sbjct 140398717 ACCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCCGGGGTAATGCCTTCCTTATCCTGG 140398776 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | |||||| || | | || || || Sbjct 140398777 ATCTTGGCCTTCACATTTTCGATGGTGTCCCTGGGCTCCACTTCAAGGGCAATGGTCTTG 140398836 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || ||||| ||||| |||||||| || Sbjct 140398837 CTGGTAAGGGTCTTCACGAAGATCTGCATTTT 140398868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244628608800