Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1588 259 5e-64 seq1481 259 5e-64 seq106 102 8e-17 >seq1588 Length=553333 Score = 259 bits (286), Expect = 5e-64 Identities = 594/884 (67%), Gaps = 18/884 (2%) Strand=Plus/Minus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || |||| || | | || || |||||||| || | Sbjct 230559 ACCACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC----- 230505 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACC 16778 || || ||||||||| | || ||||| || | || ||||| || | | | Sbjct 230504 AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA--AAC 230447 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| || | ||| || || ||||| || || ||||| ||||| ||| | Sbjct 230446 CCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 230387 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| ||| ||||| ||| | Sbjct 230386 TCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAG 230327 Query 16899 CTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | | |||| || || || || ||||| || ||| | ||| || ||||| ||| Sbjct 230326 CATTGATAATTATTTCTCTCA-CTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAAC 230268 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 230267 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 230208 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || |||||| |||||||||||| | ||| ||||||| || || || |||||| Sbjct 230207 GTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 230148 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || || || || | || || || | | ||||| | || || || |||||| Sbjct 230147 AAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTG 230088 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | | |||||| | |||| || || || | ||| | ||| ||||| ||| ||| Sbjct 230087 TCCCCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATG 230029 Query 17198 GCCTT--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254 || || | | || ||| ||||| || | || || | || || || || || || || Sbjct 230028 GCATTGAAGAGAAATTC-CTTTT--CTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGA 229972 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || || |||||| Sbjct 229971 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 229912 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || |||||| | ||||| ||| | | |||||| || || ||||| || Sbjct 229911 TCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCA 229852 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || || ||| | ||| || |||||| | || || || | | Sbjct 229851 CTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGAT 229792 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | ||||| || |||| |||||| || |||| | Sbjct 229791 TCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCC 229732 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| |||||||| | ||| ||||||| ||| | | |||||| Sbjct 229731 GCCTTCTTATACATCTGCCAGATATCATGGTACTCGACGGGGAA 229688 >seq1481 Length=155549662 Score = 259 bits (286), Expect = 5e-64 Identities = 594/884 (67%), Gaps = 18/884 (2%) Strand=Plus/Plus Query 16661 ACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCT 16720 || || ||||| || || || |||| || | | || || |||||||| || | Sbjct 44508374 ACCACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC----- 44508428 Query 16721 AGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACC 16778 || || ||||||||| | || ||||| || | || ||||| || | | | Sbjct 44508429 AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA--AAC 44508486 Query 16779 CCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGT 16838 ||||||| || | ||| || || ||||| || || ||||| ||||| ||| | Sbjct 44508487 CCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAAT 44508546 Query 16839 TCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCG 16898 |||| || || || || || | || || || | ||| ||| ||||| ||| | Sbjct 44508547 TCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAG 44508606 Query 16899 CTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 | | |||| || || || || ||||| || ||| | ||| || ||||| ||| Sbjct 44508607 CATTGATAATTATTTCTCTCA-CTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAAC 44508665 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 |||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 44508666 ATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAAC 44508725 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || |||||| |||||||||||| | ||| ||||||| || || || |||||| Sbjct 44508726 GTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 44508785 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTG 17137 ||||| || || || || | || || || | | ||||| | || || || |||||| Sbjct 44508786 AAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTG 44508845 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | | |||||| | |||| || || || | ||| | ||| ||||| ||| ||| Sbjct 44508846 TCCCCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATG 44508904 Query 17198 GCCTT--AAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGG 17254 || || | | || ||| ||||| || | || || | || || || || || || || Sbjct 44508905 GCATTGAAGAGAAATTC-CTTTT--CTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGA 44508961 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || || |||||| Sbjct 44508962 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCT 44509021 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | || |||||| | ||||| ||| | | |||||| || || ||||| || Sbjct 44509022 TCTGTAATCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCA 44509081 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || || ||| | ||| || |||||| | || || || | | Sbjct 44509082 CTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGAT 44509141 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | ||||| || |||| |||||| || |||| | Sbjct 44509142 TCCCAGTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCC 44509201 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| |||||||| | ||| ||||||| ||| | | |||||| Sbjct 44509202 GCCTTCTTATACATCTGCCAGATATCATGGTACTCGACGGGGAA 44509245 Score = 132 bits (146), Expect = 5e-26 Identities = 375/570 (66%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || ||||||| Sbjct 144080952 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATG 144080893 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 144080892 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAA 144080833 Query 17079 AGAATATACCCTCGACGGATGCAAACGC--GAT--TAATCGTTCGGCGTACGTCGCGTCT 17134 |||| | | || || | ||||| || || | ||||| | | || ||||| Sbjct 144080832 AGAAGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCT 144080773 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| | |||||| | ||||| | || || | ||| | | | ||||||||| Sbjct 144080772 TTGTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATCGTTTCA 144080714 Query 17195 ATGGC-CTTAA-ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 ||||| || || | || ||| |||| | | | | || ||| || || || || | Sbjct 144080713 ATGGCACTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATATGTGTCAATAAGGA 144080658 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | | | ||||| || || ||||| || || || || || || || || ||||| || Sbjct 144080657 GATTATTTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGG 144080598 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 ||| | || ||||||| ||| ||||| | | ||||| | | || || | Sbjct 144080597 TTTCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCAT 144080538 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | | || || || || |||| ||||| || |||||| ||| || || | || Sbjct 144080537 CACATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGG 144080478 Query 17433 CGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 | ||||| | | || ||||| | ||||| || | || |||| ||| | || Sbjct 144080477 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 144080418 Query 17493 CTGCCTTTTTATACATATTCCAAATATCAT 17522 || | || || ||||| ||||||||||||| Sbjct 144080417 CTACTTTCTTTTACATTTTCCAAATATCAT 144080388 >seq106 Length=111504155 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 10258844 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10258785 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 10258784 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10258725 Query 17106 C 17106 | Sbjct 10258724 C 10258724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517258045195320