Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1588 248 9e-61 seq1481 248 9e-61 seq793 102 8e-17 seq106 93.3 4e-14 >seq1588 Length=553333 Score = 248 bits (274), Expect = 9e-61 Identities = 591/885 (67%), Gaps = 14/885 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | | || ||||||||||| |||| | Sbjct 230556 ACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTCAGT----- 230502 Query 15962 GATATATTTTCCATAAAATCAAA-GGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || ||||| ||| |||| ||||| ||| | || || || | ||| | ||||| Sbjct 230501 GAAATATTCTCCGTAAAGTCAAATGGGCTCTCTA-CTCCGAAAACCTTGCTAAAACCCAG 230443 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTAA 16079 |||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| | Sbjct 230442 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTCA 230384 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || | || | |||| |||||||||| ||| || | Sbjct 230383 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 230324 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 |||| || || | || || || ||| | || |||||||| ||||| | Sbjct 230323 TGATAATTATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCA 230264 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 || || || || || |||| || || |||||||| |||||||| |||||||| || | Sbjct 230263 AGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGA 230204 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||||||| ||||| || || ||||||| Sbjct 230203 GGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 230144 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | || || || | | ||||| | || ||||| ||||| | | Sbjct 230143 AGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCC 230084 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || || || | || | |||| ||||| ||| ||||| | Sbjct 230083 CAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCAT 230025 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 | || | || ||||| | ||| | || || || ||||| || | ||| |||| Sbjct 230024 TGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACA 229965 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || |||||||| || ||||| || || || |||||||| || || || || | | Sbjct 229964 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 229905 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 | || ||| | |||||| ||| ||| || ||||| || || || |||||||| | Sbjct 229904 TCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 229845 Query 16620 CAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||| ||||| || ||| | | || |||||| | || || | | | | ||| Sbjct 229844 CAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCA 229787 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | || ||||| | ||||| || || | ||||| ||| |||| | ||||| Sbjct 229786 GTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTT 229727 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||||||| | ||| ||||||| ||| | | ||| || | ||| Sbjct 229726 CTTATACATCTGCCAGATATCATGGTACTCGACGGGGAAGATGAC 229682 >seq1481 Length=155549662 Score = 248 bits (274), Expect = 9e-61 Identities = 591/885 (67%), Gaps = 14/885 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | | || ||||||||||| |||| | Sbjct 44508377 ACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTCAGT----- 44508431 Query 15962 GATATATTTTCCATAAAATCAAA-GGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || ||||| ||| |||| ||||| ||| | || || || | ||| | ||||| Sbjct 44508432 GAAATATTCTCCGTAAAGTCAAATGGGCTCTCTA-CTCCGAAAACCTTGCTAAAACCCAG 44508490 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTAA 16079 |||| | | ||| ||||| ||||| || || ||||| ||||| ||| |||||| | Sbjct 44508491 TTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGT-GCAATTCA 44508549 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || | || | |||| |||||||||| ||| || | Sbjct 44508550 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT 44508609 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 |||| || || | || || || ||| | || |||||||| ||||| | Sbjct 44508610 TGATAATTATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCA 44508669 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 || || || || || |||| || || |||||||| |||||||| |||||||| || | Sbjct 44508670 AGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGA 44508729 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||||||| ||||| || || ||||||| Sbjct 44508730 GGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 44508789 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | || || || | | ||||| | || ||||| ||||| | | Sbjct 44508790 AGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCC 44508849 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || || || | || | |||| ||||| ||| ||||| | Sbjct 44508850 CAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCAT 44508908 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 | || | || ||||| | ||| | || || || ||||| || | ||| |||| Sbjct 44508909 TGAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACA 44508968 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 |||| || |||||||| || ||||| || || || |||||||| || || || || | | Sbjct 44508969 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 44509028 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 | || ||| | |||||| ||| ||| || ||||| || || || |||||||| | Sbjct 44509029 TCTGAACTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44509088 Query 16620 CAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||| ||||| || ||| | | || |||||| | || || | | | | ||| Sbjct 44509089 CAAAGAAAACCAGAACATGGGAT--ATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCA 44509146 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | | || ||||| | ||||| || || | ||||| ||| |||| | ||||| Sbjct 44509147 GTGCCGAATGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTT 44509206 Query 16738 TTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||||||| | ||| ||||||| ||| | | ||| || | ||| Sbjct 44509207 CTTATACATCTGCCAGATATCATGGTACTCGACGGGGAAGATGAC 44509251 Score = 145 bits (160), Expect = 8e-30 Identities = 381/570 (67%), Gaps = 15/570 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||| || |||| || || || ||||| |||||||| |||||||| || Sbjct 144080950 AGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTG 144080891 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||| ||||||| | |||||||||| ||||| || || |||||| Sbjct 144080890 AGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAG 144080831 Query 16319 AATATACCCTCAACAGATGCAAAAGCG--ATTAATC--GTTCCGCGTACGTAGCATCTTT 16374 || | | || || | ||||| || || | | |||| | | ||| | ||||| Sbjct 144080830 AAGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTT 144080771 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | ||||| | || || | || | ||| | |||||||| || Sbjct 144080770 GTTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATCGTTTCAAT 144080712 Query 16435 GGC-CTTAA-ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 ||| || || | || ||| |||| | || |||| | |||| || ||||| || | | Sbjct 144080711 GGCACTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATAT--GTGTCAATAAGGAGA 144080656 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 | | ||||| || || ||||| ||||| || || || || ||||||||||| | Sbjct 144080655 TTATTTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 144080596 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || | || | ||||| |||| ||||| ||| ||| |||| | || || ||| Sbjct 144080595 TCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 144080536 Query 16613 CTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAA 16670 | ||| ||||| || ||| |||||| | | || |||||| ||| |||| | || Sbjct 144080535 CATGCTGCAAATAAAGCCAGAATATGGGAT--ATAAAATATCTTTACTCAGGCTTCAGGG 144080478 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCA 16730 | ||| | | || ||||| | ||||| || | | | |||| || | || Sbjct 144080477 CTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCT 144080418 Query 16731 CTGCCTTTTTATACATTTTCCAAATATCAT 16760 || | || || ||||||||||||||||||| Sbjct 144080417 CTACTTTCTTTTACATTTTCCAAATATCAT 144080388 >seq793 Length=147911612 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 104140656 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 104140715 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| ||||| | Sbjct 104140716 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 104140775 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 104140776 CCACCACTCTTTCC 104140789 >seq106 Length=111504155 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 10258782 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGC 10258724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511130251766680