Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq183 509 1e-139 seq106 430 9e-116 seq301 315 5e-81 seq252 141 7e-29 >seq183 Length=202621043 Score = 509 bits (564), Expect = 1e-139 Identities = 453/566 (80%), Gaps = 3/566 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||| |||||||||||||||||||||| || |||| Sbjct 96548800 AAAACACCTTCATATTAATCATTCT---CATATACTTCAAATTTGTACTTGATGTGTTTC 96548856 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| ||||||| ||| ||||| || |||||| |||||||| | Sbjct 96548857 CCCTCCTGGACATCAGAGAGAACACCTGGGTATTCAGGCAGAAGTTTATATTTCTCCAAG 96548916 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| ||||| |||||| ||||||| ||||||||| ||||||||||| |||||||| ||| Sbjct 96548917 TCAATTTCTGAAAAAAACGTGTCACTTTCAAAGTCCTGCATGATCCTTGTCACAAATAGT 96548976 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||||| || | | | | |||| ||||| ||||| |||||||| || |||| |||||| Sbjct 96548977 TTAAGATGGCCTAGGTGATTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAA 96549036 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 | ||||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||| Sbjct 96549037 ATCATGTCTACTTTATTTGCTAATTCTGGTCGTTCAGTAAGTTTTAAGGCATCATCCAAA 96549096 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || | || | ||||||||||| |||||| | ||||| ||||| |||||||||| | | Sbjct 96549097 CTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAA 96549156 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 |||||||| | |||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 96549157 TTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCC 96549216 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 |||||||| | |||||||||| | ||| ||||| || || |||||||| ||||||| Sbjct 96549217 ATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTGGTCATTCTCTGGAAATAC 96549276 Query 4435 TTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTT 4494 | || |||||| | || |||| |||| || || | ||||| |||||||||||| Sbjct 96549277 CTGAATTCATTCCTGAGCGGCGGCCTGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTT 96549336 Query 4495 TGAGCTACAGCAACAATGCAGTTTAG 4520 || | ||||| || ||||||||||| Sbjct 96549337 TGGGACACAGCGACGATGCAGTTTAG 96549362 >seq106 Length=111504155 Score = 430 bits (476), Expect = 9e-116 Identities = 421/540 (78%), Gaps = 6/540 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||| ||||||||||||||||||||| | |||| Sbjct 84540299 AAAACACCTTCATATTAATCATTCTTCTCATGTACTTCAAATTTGTACTTAATGCCTTTC 84540240 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| | | | |||| ||| |||||| || || ||| |||||||| | | Sbjct 84540239 TCCTCCTGGACATCAAAGAAAACATCTGGGTATTCTGGCAGAAATTTATATTTCTCCAAA 84540180 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 |||| |||||||||||| ||||||| ||||||||| || |||||||| || ||||| ||| Sbjct 84540179 TCAATTTCTGGAAAAAACGTGTCACTTTCAAAGTCCTGTATGATCCTTGTGACAAATAGT 84540120 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTAT-ACACAGAACTACCTCCAATTATCCA 4193 |||||| || || | | |||| | ||| |||| | | ||||||||| |||| |||||| Sbjct 84540119 TTAAGACTGCTTGAGTGATTCATGGATTCCTTATAAAATAGAACTACCACCAACTATCCA 84540060 Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAA 4253 | ||||||||||||||||||||||||||| | | |||||||||| |||||||| | Sbjct 84540059 AATCATGTCTACTTTATTTGCTAATTCTGGTTAT----TAAGTTTTAAGGCATCATCCAG 84540004 Query 4254 ACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAAC 4313 ||| | || | ||| ||| ||| ||||| || | ||| | || | |||||||| | Sbjct 84540003 ACTTCTTGCAAGAAATTGATCTCCTTGTGG-AGGTTCTTGTGGTCTCTCCTGAGAACTAA 84539945 Query 4314 ATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACC 4373 ||||||||| |||||||| || |||||||||||||| |||||||| |||| |||| Sbjct 84539944 ATTAATTCTATTCTTTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGATCTTCCTACC 84539885 Query 4374 CATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATG 4433 ||||||||| |||||||||||| || ||| || || || || |||| ||| ||||||| Sbjct 84539884 CATAATCACCAAATTCTGTTTACCTTCTACTGAGGAGGTTGTGGTCACTCTCTGGAAATA 84539825 Query 4434 TTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTT 4493 | || |||||| | || |||||| |||| || || | ||||| ||||||||||| Sbjct 84539824 CCTGAATTCATTCCTGAGCGGTGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTT 84539765 >seq301 Length=175400573 Score = 315 bits (348), Expect = 5e-81 Identities = 292/369 (79%), Gaps = 1/369 (0%) Strand=Plus/Plus Query 4152 ACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATT 4211 |||||| ||||| ||||| |||||||| || |||| |||||| | |||||||||| |||| Sbjct 31615001 ACTCATGGCTTCCTTATAAACAGAACTGCCACCAACTATCCAAATCATGTCTACTCTATT 31615060 Query 4212 TGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATG 4271 |||||||||||| |||| ||||||||||| ||||| | ||| | || | |||||| Sbjct 31615061 TGCTAATTCTGGTTGTTAAGTAAGTTTTAAGATCTCATCCAGACTTCTGGCAAGAAAATG 31615120 Query 4272 AGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAA 4331 ||||| |||||| | ||||| ||||| ||||||||||| | ||||||||| | ||||| Sbjct 31615121 AGCTCGTTGTGGAGGTTCCTTGAGTTCTTTGCTGAGAACTAAATTAATTCTATCCTTTAA 31615180 Query 4332 AGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTG 4391 ||| || |||||| ||||||| |||||||| ||||| ||| || |||||| | |||||| Sbjct 31615181 AGGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACAAAATCACCAGATTCTG 31615240 Query 4392 TTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAG 4451 |||| || ||| ||||| | || |||||||| ||||||| |||| |||||| | || Sbjct 31615241 TTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACCTAAATTCATTCCTGAG 31615299 Query 4452 TCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAAT 4511 ||||| |||| || || | ||||| ||||||||||| |||| ||||| || || Sbjct 31615300 CGGCGGCCAGGGCAGGTCGCCGTTCTTGCCGATGCCCATGTTCTGAGACACAGCGACGAT 31615359 Query 4512 GCAGTTTAG 4520 ||||||||| Sbjct 31615360 GCAGTTTAG 31615368 Score = 293 bits (324), Expect = 2e-74 Identities = 414/577 (72%), Gaps = 15/577 (3%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 ||| ||||||| |||||| |||||||||||||||||||||||||| | |||||| || | Sbjct 64609144 TTTATATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTC 64609203 Query 4023 CACATTAGAAAGAACACTT---GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAA 4079 ||||| ||| | ||||| | || |||||| | |||||| |||||||||| |||| Sbjct 64609204 CACATCAGAGACAACACCTTGTGGGTATTCTGGGAGAAGTTTATATTTCTCTAAATCACC 64609263 Query 4080 TTCT---GGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTT 4136 |||| ||| |||| ||||||| || |||||| |||||||||| |||||||| | ||| Sbjct 64609264 TTCTAGGGGAGAAAACGTGTCACTTTGAAAGTCCTGCATGATCCATGTCACAAATAATTT 64609323 Query 4137 AAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGAC 4196 || || | | || |||| | ||| ||||| |||||||| ||||| | | | | | Sbjct 64609324 AAAATGGTCTCAAT---TCATGGATTCCTTATAAACAGAACTGCCTCCCACTGTAAAAAA 64609380 Query 4197 CATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACT 4256 || |||| |||||||||| ||| | | || || || ||||||| |||||| | | | | Sbjct 64609381 CACGTCTTGTTTATTTGCTGATTTTAGTTGCTCAATACGTTTTAAGGCATCACCCAGAAT 64609440 Query 4257 CTTAGCTAA-AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACAT 4315 |||| || |||| ||| ||| || || | ||| | ||| | |||| ||| | || Sbjct 64609441 -TTAGTCAAGAAAAGGAGGTCTTTGCGGTGGTTCCCTGGATTCTCTACTGACAACTAAAT 64609499 Query 4316 TAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCA 4375 ||||| | |||||||| | |||||||||| ||| ||||||| |||| || | Sbjct 64609500 TAATTATATACTTTAAAGGTTGATTCTTCTCAGTAATCAAGAACCAGTTCTTCCTAATAA 64609559 Query 4376 TAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTT 4435 || |||||||| |||||| | | | ||||| | || |||||||||||||| | Sbjct 64609560 AAAATACTAAATTTTGTTTACCCTCTGCTGAAGAGGGTGTGGTCATTCTTTGGAA----T 64609615 Query 4436 TAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTT 4495 || | ||| | || || || |||| || || | || |||||||| || | Sbjct 64609616 CGAATTTATTTTTGAGCTGGGGTCAGGGCAGGTCCCCATTCCTGATGATGCCCATCTTCT 64609675 Query 4496 GAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 | | |||| |||||||||||||| | |||||||| Sbjct 64609676 GGGAAACAGTGACAATGCAGTTTAGCGGATGAACCAT 64609712 Score = 291 bits (322), Expect = 6e-74 Identities = 237/285 (83%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| |||||||| |||||||||||||||||||||||| | |||| Sbjct 56986731 AAAACACCTTCATATTAATCATTCTTCTTATATACTTCAAATTTGTACTTAATGCGTTTC 56986790 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || || |||| ||| ||||||| || |||||| || |||||| |||||||| | | Sbjct 56986791 TCCTCCTGGACATCAGAGAGAACACCAGGGTATTCTGGCAGAAGTTTATATTTCTCAAAA 56986850 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTC-AAAGTCTTGCATGATCCTAGTCACAAACAG 4133 |||| |||||||||| | ||||||| ||| |||||| ||||||||||| |||||||| || Sbjct 56986851 TCAATTTCTGGAAAACACGTGTCACTTTCAAAAGTCCTGCATGATCCTTGTCACAAATAG 56986910 Query 4134 TTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCA 4193 |||||||| || ||| | | ||| ||||| ||||| |||||||| || |||| |||||| Sbjct 56986911 TTTAAGATGGCCTGGGTGATTCACGGCTTCCTTATAAACAGAACTGCCACCAAGTATCCA 56986970 Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTC-GGTAAGTT 4237 | ||| ||||||||||||||||||||||| ||||| | |||||| Sbjct 56986971 AATCATCTCTACTTTATTTGCTAATTCTGGTTGTTCAGTTAAGTT 56987015 Score = 206 bits (228), Expect = 2e-48 Identities = 191/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| |||| | |||| ||| ||||| || || || || |||||||| || | ||| || Sbjct 52788842 AGCTCTTAGGCCACATGGTGGACAATCGGGGTGACACAGGTGCAGCCCACGGACACCAGT 52788783 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || || |||||| || || || | |||||| || || ||| Sbjct 52788782 ATCTTCTCCAGCCGGAAGGAGTTGGGGCAGTGTGGAGGCTCCCTGCGCAGGACCAGGATC 52788723 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||||||| || ||||||||||| || | || Sbjct 52788722 TCTTGCTGGATGGGGACAGAGTTCATGTGGTAGTCCACGTTCCCATCAGCGTTGATGCAG 52788663 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || |||| ||| |||||||| ||||| ||||||||||||||||| || | || |||||| Sbjct 52788662 CCCAAGTGGCGGCACTTTGCCTCCCAGATCACAGAGGGATATCTCTCAGGGTCCTCATTG 52788603 Query 27171 CG 27172 || Sbjct 52788602 CG 52788601 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||||| ||||||| || || |||| |||||||| ||||| | |||||| | | | ||| Sbjct 52787350 TGGAGATTCCAAGGTGAGGTGGATCGGTTGTAGTAATCTGAGGACCTTTTGGGATTGGTA 52787291 Query 27234 TT------CCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTA 27287 || || |||| ||||| ||| | |||||||||| ||| || ||| | |||| Sbjct 52787290 TTGGTATTCCGGTTATGGATGTTCAGGTTGACCATCACAGTCCGGGGGAAGTTCTTGTCC 52787231 Query 27288 GCAGC---TAAGCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCT 27344 ||| | ||||| ||| || ||| | ||| ||| ||| ||| ||||| || Sbjct 52787230 TCAGAATTTGGGCATCCTGGATTTCGTGGGATTGCGATTCCTGCCTTCACTATGGCCTCC 52787171 Query 27345 ATGCTCAGCAGCAGAAG 27361 | |||||||||||| || Sbjct 52787170 AGGCTCAGCAGCAGTAG 52787154 >seq252 Length=181907262 Score = 141 bits (156), Expect = 7e-29 Identities = 107/126 (85%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| || |||| |||||||||||||||||||||| ||||||||||||| Sbjct 35075074 TTATAAACAGAACTGCCACCAACTATCCAGACCATGTCTACTTTACTTGCTAATTCTGGT 35075015 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 ||||| ||||||||||| |||||||||| ||| | | | ||||||||||| |||||| Sbjct 35075014 TGTTCAGTAAGTTTTAAGGCATCATCTAGACTTCTGGAAAGAAAATGAGCTCCTTGTGGA 35074955 Query 4285 AGCTCC 4290 | ||| Sbjct 35074954 GGTTCC 35074949 Score = 134 bits (148), Expect = 1e-26 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4045 TATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCA 4104 || ||| || |||||| |||||||| | ||||| |||||||||||| ||||||| |||| Sbjct 35079099 TACTCTGGCAGAAGTTTATATTTCTCCAAATCAATTTCTGGAAAAAACGTGTCACTTTCA 35079040 Query 4105 AAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCT 4164 ||||||||||||||||| |||||||| |||||||||| || ||| | | |||| ||||| Sbjct 35079039 AAGTCTTGCATGATCCTTGTCACAAATAGTTTAAGATGGCCTGGGTGATTCATGGCTTCC 35078980 Query 4165 TT 4166 || Sbjct 35078979 TT 35078978 Score = 129 bits (142), Expect = 4e-25 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||||||||| | ||||||||| || |||||||| || ||||||||||| Sbjct 35063568 CTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGG 35063509 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| |||||||||||||| | |||||||||| || Sbjct 35063508 AATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 35063460 Score = 105 bits (116), Expect = 5e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 35083903 AAAACACCTTCATATTAATCATTCTTCTCATATACTTCAAATTTGTACTTAATGCCTTTC 35083844 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| ||| ||||||| ||| ||| Sbjct 35083843 TCCTCCTGGACATCAGAGAGAACACCTGGGTAT 35083811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361055502209699