Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq183 248 1e-60 seq1 163 3e-35 seq1332 159 4e-34 >seq183 Length=202621043 Score = 248 bits (274), Expect = 1e-60 Identities = 614/918 (67%), Gaps = 29/918 (3%) Strand=Plus/Plus Query 9460 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 9518 || ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| | Sbjct 47272618 GCCCAGTTTGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 47272676 Query 9519 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 9578 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 47272677 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 47272736 Query 9579 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 9638 | | ||| |||| || || ||| |||| || || || || | ||||| ||||| ||||| Sbjct 47272737 GCTCAACCTGGCCATTTCAGACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTA 47272796 Query 9639 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTC--AGGGGT 9696 | | | | ||| | ||| |||||| | | ||||||| || ||| |||| | Sbjct 47272797 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCAGGGTT 47272853 Query 9697 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 9756 | | ||| | |||||||| || |||||| ||| |||||||| ||| | |||||| Sbjct 47272854 TTATCACACAGGCT--TGTACAGCGAGATCTTTTTCATAATCCTGCTGACAATCGACAGG 47272911 Query 9757 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 9814 || || || | ||| ||||||| ||| || ||| | || || || | ||| Sbjct 47272912 TACCTGGCCATCGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTG 47272969 Query 9815 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 9874 | | ||| | | |||||| ||||||| | | | || ||||||||| ||| Sbjct 47272970 TCATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCT 47273029 Query 9875 TTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATG 9933 | ||| |||| | | | || | || || | || ||||||||| Sbjct 47273030 TCTATGAGATTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGCTCTTTACCCAGAGGAT 47273088 Query 9934 TCTACAAATGTTTGGAGGCGCGCC--CACGTTGCAAAGGTGATTATGTTAAGTCTCATTT 9991 | | || ||||||| | ||| || || ||| || || ||||| || Sbjct 47273089 ACAGTATATAGCTGGAGGCATTTCTACACTCTGAGAA--TGACCATCTTCTGTCTCGTTC 47273146 Query 9992 TGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCC 10051 | ||||||||| ||||||| |||||||| | ||| |||| || |||| ||||| ||| Sbjct 47273147 TCCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACACTGCTGAGGTGCC 47273206 Query 10052 CCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTG 10111 |||| || || ||||||||||||||| ||||||| |||||||||||| || | ||| Sbjct 47273207 CCAGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGTCGGTGTTTTTCA 47273266 Query 10112 TTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA 10171 |||| |||||||||||||| | | | |||| || ||| ||| ||| | || ||||| Sbjct 47273267 TTTTCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTCCTATCA----ATCCATCTTA 47273322 Query 10172 -----ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAAC 10226 | || | |||| ||||| | ||||| ||| ||||| | ||| | Sbjct 47273323 TTTGGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGT 47273381 Query 10227 AGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 10286 | |||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| Sbjct 47273382 GATCGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTT 47273441 Query 10287 TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACAT 10346 | | ||||| |||||||||||||| ||||| ||| |||| ||| ||||| Sbjct 47273442 CCGGAAGTACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAGATACAT 47273501 Query 10347 CCCCTTCCTGTCTGGTGA 10364 ||| ||||| || |||| Sbjct 47273502 CCCATTCCTTCCTAGTGA 47273519 Score = 248 bits (274), Expect = 1e-60 Identities = 614/918 (67%), Gaps = 29/918 (3%) Strand=Plus/Plus Query 176346 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATAT 176404 || ||| | || ||| | ||||| || ||||| | || |||| | ||||||||| | Sbjct 47272618 GCCCAGTTTGTGCCCCCGCTGTACTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAATGT 47272676 Query 176405 CTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACT 176464 | |||||||| || |||||| ||||| || | || || | || ||||| | || Sbjct 47272677 GGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCT 47272736 Query 176465 GTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTA 176524 | | ||| |||| || || ||| |||| || || || || | ||||| ||||| ||||| Sbjct 47272737 GCTCAACCTGGCCATTTCAGACCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACTA 47272796 Query 176525 TATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTC--AGGGGT 176582 | | | | ||| | ||| |||||| | | ||||||| || ||| |||| | Sbjct 47272797 TGTCAGGGGG---CATAACTGGGTTTTTGGCCATGGCATGTGTAAGCTCCTCTCAGGGTT 47272853 Query 176583 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 176642 | | ||| | |||||||| || |||||| ||| |||||||| ||| | |||||| Sbjct 47272854 TTATCACACAGGCT--TGTACAGCGAGATCTTTTTCATAATCCTGCTGACAATCGACAGG 47272911 Query 176643 TATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCA 176700 || || || | ||| ||||||| ||| || ||| | || || || | ||| Sbjct 47272912 TACCTGGCCATCGTCCATGCTGTGTTTGCCCTTCGAGCCC--GGACTGTCACTTTTGGTG 47272969 Query 176701 TAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCT 176760 | | ||| | | |||||| ||||||| | | | || ||||||||| ||| Sbjct 47272970 TCATCACCAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATCT 47273029 Query 176761 TTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATG 176819 | ||| |||| | | | || | || || | || ||||||||| Sbjct 47273030 TCTATGAGATTGAAGA-GTTGTTTGAAGAGACTCTTTGCAGTGCTCTTTACCCAGAGGAT 47273088 Query 176820 TCTACAAATGTTTGGAGGCGCGCC--CACGTTGCAAAGGTGATTATGTTAAGTCTCATTT 176877 | | || ||||||| | ||| || || ||| || || ||||| || Sbjct 47273089 ACAGTATATAGCTGGAGGCATTTCTACACTCTGAGAA--TGACCATCTTCTGTCTCGTTC 47273146 Query 176878 TGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCC 176937 | ||||||||| ||||||| |||||||| | ||| |||| || |||| ||||| ||| Sbjct 47273147 TCCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACACTGCTGAGGTGCC 47273206 Query 176938 CCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTG 176997 |||| || || ||||||||||||||| ||||||| |||||||||||| || | ||| Sbjct 47273207 CCAGTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGTCGGTGTTTTTCA 47273266 Query 176998 TTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA 177057 |||| |||||||||||||| | | | |||| || ||| ||| ||| | || ||||| Sbjct 47273267 TTTTCTGGACACCCTACAATGTGGCTATCCTTCTCTCTTCCTATCA----ATCCATCTTA 47273322 Query 177058 -----ACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAAC 177112 | || | |||| ||||| | ||||| ||| ||||| | ||| | Sbjct 47273323 TTTGGAAATG-ACTGTGAGCGGAGCAAGCATCTGGACCTGGTCATGCTGGTGACAGAGGT 47273381 Query 177113 AGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTT 177172 | |||||| | ||||| ||||| ||||| ||||||||||| || || || |||| ||| Sbjct 47273382 GATCGCCTACTCCCACTGCTGCATGAACCCGGTGATCTACGCCTTTGTTGGAGAGAGGTT 47273441 Query 177173 TAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACAT 177232 | | ||||| |||||||||||||| ||||| ||| |||| ||| ||||| Sbjct 47273442 CCGGAAGTACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAGATACAT 47273501 Query 177233 CCCCTTCCTGTCTGGTGA 177250 ||| ||||| || |||| Sbjct 47273502 CCCATTCCTTCCTAGTGA 47273519 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 176413 ||| | ||||| || |||| | ||| || |||| || | || || ||| | ||||| Sbjct 47211103 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 47211045 Query 176414 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 176472 | | |||| || ||||| || | | |||||| | || | ||| | || | ||| Sbjct 47211044 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 47210989 Query 176473 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 176531 |||| || |||||| |||| || || || || | || || ||||| |||| | | || Sbjct 47210988 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATCGACTACAAGTTGA 47210929 Query 176532 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 176591 | | |||| ||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 47210928 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 47210873 Query 176592 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 176651 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 47210872 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 47210813 Query 176652 GTTGTCTATGCTGTAACTGCTTTGAGG 176678 | ||| | || || ||| ||| || Sbjct 47210812 ATCGTCCACGCCGTGTTTGCCTTGCGG 47210786 Score = 86.0 bits (94), Expect = 7e-12 Identities = 219/327 (67%), Gaps = 15/327 (5%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTG-TGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGT--- 9527 ||| | ||||| || |||| | ||| || |||| || | || || ||| | ||||| Sbjct 47211103 CCCCCTCTGTA-CTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACATCCTGGTGGTCCT 47211045 Query 9528 GATTATTGT-CATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACT 9586 | | |||| || ||||| || | | |||||| | || | ||| | || | ||| Sbjct 47211044 GGTCCTTGTGCA----ATACAAGAGGCTAAAAAACATGACCAGCATCTACCTCCTGAACC 47210989 Query 9587 TGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGA 9645 |||| || |||||| |||| || || || || | || || ||||| |||| | | || Sbjct 47210988 TGGCCATTTCTGACCTGCTCTTCCTGTTCACGCTTCCCTTCTGGATCGACTACAAGTTGA 47210929 Query 9646 ATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTAC 9705 | | |||| ||| ||||||| | || ||||||| | ||| || | | |||| Sbjct 47210928 AGG----ATGACTGGGTTTTTGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTAC 47210873 Query 9706 ATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCT 9765 | |||||||| || |||||| |||||||||||| || | |||||||| || || Sbjct 47210872 ACAGGCTTGTACAGCGAGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCC 47210813 Query 9766 GTTGTCTATGCTGTAACTGCTTTGAGG 9792 | ||| | || || ||| ||| || Sbjct 47210812 ATCGTCCACGCCGTGTTTGCCTTGCGG 47210786 >seq1 Length=228573443 Score = 163 bits (180), Expect = 3e-35 Identities = 134/159 (84%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| ||||||| ||||||||| || || || ||||||||||||||||| | || Sbjct 185657832 CAGCGCCGTAGCCTCAGCCTGAGGGTCTTCAGGTTCTCCCCCAGGGAGTTCACATGCACC 185657891 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || | |||| || || |||||||| || |||||||||||||||||||||||||||| Sbjct 185657892 TTGATGTCTGG---GT-CT-TGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACT 185657946 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||||| ||| ||||| ||||||||||||| Sbjct 185657947 GGATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 185657985 Score = 111 bits (122), Expect = 2e-19 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 |||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 185655559 CTCAGTTTCGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 185655618 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| ||||||| ||||| || ||||||| Sbjct 185655619 CACTCATGGCTTTGTAGATGCCTTTCTCTTGGAGCT 185655654 >seq1332 Length=78221452 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 17408364 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 17408423 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 17408424 ACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 17408483 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 17408484 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 17408524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589748945953960