Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1481 482 3e-131 seq1409 443 2e-119 seq183 320 2e-82 seq301 120 4e-22 >seq1481 Length=155549662 Score = 482 bits (534), Expect = 3e-131 Identities = 459/587 (78%), Gaps = 0/587 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||| | ||||| |||||||||| || Sbjct 13253628 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTCGAAGCGGCGGCTGTACCTACGT 13253687 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 13253688 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 13253747 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 13253748 CACACCAGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 13253807 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||| ||||| | || |||| |||||||| ||| Sbjct 13253808 GGGGCTGGCAGGGCCTCCCGCAGGAAGGCAAAGAGAGTGTGCGCCCCCGCACCGTTCACC 13253867 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||| ||||||||||||||| ||||| |||| ||| || ||||| ||||||| ||| Sbjct 13253868 TCGCCCTTCTCGAAGAGCATGAAGTTGGGCTGGAACCCACCACCAGGTCGGACGTACTTG 13253927 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 13253928 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 13253987 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || |||||||| ||||| ||||| | ||| ||| |||||||||||||||||||||| ||| Sbjct 13253988 AAGCCAAGCACCACCAGGCCCCGGGGTCCGAGGTGCCGCTGCAGCTCGTTCATCTGGGTG 13254047 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||||||| | |||||||||||||| || ||||| || || | ||| | || Sbjct 13254048 TAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTCTATAAGTAGTACCTTGACC 13254107 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| | ||||||||| || || ||| | | |||| || |||||||| ||| Sbjct 13254108 CGCAGGGAGCCCAGGCTCACAGGCTCCCCGACGGCCAGCAGGCGCGCCGAGAAGGCATAC 13254167 Query 83597 ACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCGCGTACTTGGCACA 83643 || || || | | ||||| || || | || || ||| |||| || Sbjct 13254168 ACCGACTGGGCCGCCGCCGCCGCTGGCCGAGCAGCATACATGGCGCA 13254214 >seq1409 Length=33445071 Score = 443 bits (490), Expect = 2e-119 Identities = 443/568 (78%), Gaps = 5/568 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| |||| ||||||| Sbjct 13485748 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTATACCTGCAT 13485807 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||||| ||||||| ||||||||| |||||||||||||| |||||||| Sbjct 13485808 ACAGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCCACATCGTTGCGA 13485867 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 13485868 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCTCAGTGGCGTCGTCGCTG 13485927 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||| |||||| || || |||||| |||| || || |||| |||| ||| ||| Sbjct 13485928 GGGGCTGGC-CGGCCTCCCGCAGAAAGGCGGAGAGAGGGTGCGCCCCCGCACTGTTCACC 13485986 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||| |||||||| ||| | |||||||| || ||||| |||||| ||| Sbjct 13485987 TCGCACTTCTCCAAGAGCATGAAGCTGGGCTCGAACCCACCACCAGGTTGGACGTACTTG 13486046 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||||| || ||||| | |||| |||||| ||||| || || |||||||| |||||| Sbjct 13486047 AGGGATTTCAGAATCTCCTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTTGCACGGG 13486106 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || |||||||| ||||| ||||| | || |||||||||||||||||||||||||| ||| Sbjct 13486107 AAGCCAAGCACCACCAGGCCCCG-GGGCCGAGGCGCCGCTGCAGCTCGTTCATCTGGGTG 13486165 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || |||||||||||| | |||||||||||||| || |||||||| || | || |||| Sbjct 13486166 TAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCACATTCTCGATAAGTAGTCCCTTGCCC 13486225 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | | |||| || |||||| || || | || | ||||| || || ||||| ||| Sbjct 13486226 CGCAGGGAGCC-CAGGGCACAGGCTCCCCGCTGGCCAGCGGGCACGCGGAAAAGGCTTAC 13486284 Query 83597 ACAGATCTGGTC-TCTGCCGCGGCAAGC 83623 || || |||| | | ||||| || ||| Sbjct 13486285 ACCGA-CTGGGCAGCCGCCGCCGCTAGC 13486311 >seq183 Length=202621043 Score = 320 bits (354), Expect = 2e-82 Identities = 273/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 50431129 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 50431188 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | |||| ||||||| ||||||| ||||||||| ||||||||||| || |||||||| Sbjct 50431189 AGGGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGA 50431248 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| ||||||| ||||||| ||| |||| | ||||||||| Sbjct 50431249 CACACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATAAGCGCAGTGGCGTCGTCGCTG 50431308 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || |||||||||||||| || || |||| |||||||| ||| Sbjct 50431309 GGAGCTGGCAGGGCCTCCCGCAGGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCACC 50431368 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 50431369 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGCCGGACGTACTTG 50431428 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 50431429 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 50431465 Score = 223 bits (246), Expect = 4e-53 Identities = 201/253 (79%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 50431742 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGTCCGAGGC 50431801 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 50431802 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 50431861 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 |||||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 50431862 CGTTCTCGATAAGTAGTACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 50431921 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||| ||||| || || | | ||||| || ||| | || | Sbjct 50431922 CCAGCGGGCGCGCCGAGAAGGCATACACCGACTGGGCCGCCGCCGCCGCTAGCCGAGCAG 50431981 Query 83631 CGTACTTGGCACA 83643 | || |||| || Sbjct 50431982 CACACATGGCGCA 50431994 >seq301 Length=175400573 Score = 120 bits (132), Expect = 4e-22 Identities = 206/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 110541621 GCAGCTACGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 110541563 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 110541562 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 110541503 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | |||| ||||| Sbjct 110541502 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAAGCTCATCCGCCACTAC 110541444 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| |||| ||||| ||||| ||||| |||| | ||||| | Sbjct 110541443 GTGCAGCTGCTCTACCCA----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 110541388 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 110541387 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAAAGGCGC 110541339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608458544887960