Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1056 114 1e-20 seq1283 109 6e-19 seq301 100 3e-16 seq1 98.7 1e-15 seq1197 93.3 5e-14 seq252 93.3 5e-14 seq866 86.0 7e-12 seq1113 84.2 2e-11 seq47 82.4 9e-11 >seq1056 Length=137163284 Score = 114 bits (126), Expect = 1e-20 Identities = 160/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 42961 CTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAG 43020 |||| | ||| | ||||| |||| ||| ||| || || || ||||| |||| ||| | Sbjct 128406245 CTCTGAGACGGAGCACCAGGTGCAGGGTGA-CTCTTTCTGGATGTTGTAGTCAGACAGGG 128406303 Query 43021 TCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGC 43080 | ||| | || || |||||||| ||||| || || | | ||||||||| | || | || Sbjct 128406304 TGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGC 128406363 Query 43081 TCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGA 43140 |||||||| ||| ||| ||||| || | | ||||| || | || || || | Sbjct 128406364 CTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAA 128406423 Query 43141 CCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| ||||| || || ||||| |||||||||||||| Sbjct 128406424 GGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATTTGCAT 128406466 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| |||| || ||| || || || ||||| |||| | Sbjct 128407834 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 128407893 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 128407894 AGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 128407953 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| ||| ||| ||||| || | | ||||| || | || || Sbjct 128407954 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 128408013 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 128408014 TCAAGGGTGATGGTTTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 128408060 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||| |||| || ||| || || || ||||| |||| | Sbjct 128406924 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAC 128406983 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 128406984 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 128407043 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||||| ||| ||| ||||| || | | ||||| || | || || Sbjct 128407044 ATGCCTTCCTTGTCTTGGATCTTTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 128407103 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 128407104 TCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 128407150 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 128434190 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 128434249 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 128434250 ATACTAACGAGGA 128434262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 98809724 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 98809665 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 98809664 TACTAACGAGGA 98809653 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 128421887 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 128421946 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 128421947 TACTAACGAGGA 128421958 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 101288743 TTATCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 101288684 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 101288683 ACTATACTAACGAGGA 101288668 >seq1283 Length=83181570 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| ||||| || |||||| || || ||||| |||| Sbjct 38692117 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 38692058 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 38692057 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 38691998 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| ||| || || | | | | ||||| || | ||||| Sbjct 38691997 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 38691938 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || || || || ||||| |||||||| || Sbjct 38691937 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTGAC 38691885 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 48456461 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 48456402 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 48456401 ATACTAACGAGGA 48456389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| |||| |||| || |||||| || || ||||| |||| Sbjct 38692345 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 38692286 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 38692285 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 38692226 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || ||| ||| || || | | | | ||||| || | ||||| Sbjct 38692225 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 38692166 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 38692165 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 38692119 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||| |||| || ||| || || || ||||| |||| ||||| || | Sbjct 38692561 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 38692502 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||| | ||||||||||| || | || || || Sbjct 38692501 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 38692442 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || || | | | | ||||| || | ||||| || | |||||| Sbjct 38692441 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 38692382 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || ||||| ||||| Sbjct 38692381 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 38692347 >seq301 Length=175400573 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27701987 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27701928 Query 60126 TACTACCGAGG-ATTGA 60141 ||||| ||||| ||||| Sbjct 27701927 TACTAACGAGGAATTGA 27701911 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 27808815 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 27808874 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 27808875 ATACTAACGAGGA 27808887 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 || |||||||| || | |||||||||||| || |||||||||||||||||| |||||| Sbjct 27728990 AACTTTTCTCCCCGTCGAGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTC 27728931 Query 60119 ACCACTATACTACCGAGGA 60137 |||||||||||| |||||| Sbjct 27728930 ACCACTATACTAACGAGGA 27728912 >seq1 Length=228573443 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 139625619 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 139625678 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 139625679 TACTAACGAGGA 139625690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 139633071 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 139633130 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 139633131 TACTAACGAGGA 139633142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| |||| ||||| | | || ||||||||| | || || || Sbjct 196892022 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCTGCATGCCTGCAAA 196892081 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| | | || ||||| ||| ||| || || | | Sbjct 196892082 GATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACATT 196892141 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 196892142 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 196892201 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||| |||||||| || Sbjct 196892202 GAAGATCTGCATTTTGAC 196892219 >seq1197 Length=81586097 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||| | || |||||||||||||||||| |||| || ||| || | || Sbjct 51799190 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 51799249 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| ||||| || || |||| |||||| || | || | | ||||| || Sbjct 51799250 TTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 51799309 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||| || | ||| || |||| |||||||| Sbjct 51799310 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 51799369 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || || || || || |||||||| Sbjct 51799370 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 51799405 >seq252 Length=181907262 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 142455243 CTCCTTGTCAGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 142455302 Query 60126 TACTACCGAGG 60136 ||||| |||| Sbjct 142455303 TACTAATGAGG 142455313 >seq866 Length=116767853 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||| | ||||||||||| |||||| |||| Sbjct 52121152 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCAGGGATACTCACCACCATACTAACGAG 52121211 Query 60136 GA 60137 || Sbjct 52121212 GA 52121213 >seq1113 Length=91965084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 43030 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 43089 |||| ||| || ||||| ||||| || ||||||||||| | || | | |||||||| Sbjct 42394442 CATCCAGCCATTTCCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT 42394383 Query 43090 CCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| |||| | ||||| || | |||||| | | | || || | |||||| Sbjct 42394382 CC-TGAATTTTGGTTTTGACATTCTAAATGGTGTCGGTGGGCTTGACCTCAAGGGTGATG 42394324 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| |||||||| ||||| Sbjct 42394323 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 42394289 >seq47 Length=45499 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | || ||||||||| |||||||| |||||||||||| |||| ||||||| Sbjct 41050 TCTCCCCGTCGGGAGATCGAACCCCGGTCTCCCCCGTGACAGGCGGGGATACGCACCACT 41109 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 41110 ATACTAACGAGGA 41122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571499890993720