Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq301 98.7 1e-15 seq1345 96.9 5e-15 seq1283 95.1 2e-14 seq1197 93.3 6e-14 seq252 93.3 6e-14 seq1091 86.0 9e-12 seq401 86.0 9e-12 >seq301 Length=175400573 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| || || || | ||| | |||||| || ||| || ||| | || || || Sbjct 117183170 CCACCACGAAGCCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAGA 117183112 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| ||||||||||| |||| |||||||||||| ||||| Sbjct 117183111 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 117183052 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 117183051 AATTCCTTCCTTATCCTG 117183034 Score = 84.2 bits (92), Expect = 3e-11 Identities = 220/312 (71%), Gaps = 34/312 (11%) Strand=Plus/Minus Query 112504 ATATTTTAAATCGAATACTTTAAATGATATTTTATATAAATTATGTTCTGAAGATATTAT 112563 |||||||| || | || | || || |||||||||||| ||||| | | || || |||| Sbjct 163104902 ATATTTTATATATA-TATTATATAT-ATATTTTATATATATTATTATAT-AATAT-TTAT 163104847 Query 112564 AATTCCCGATGATAGttatataaataatttaaattataat-gata-tgtttatat--ctg 112619 ||| ||||||||||| ||| |||| |||||| | ||| | ||||||| || Sbjct 163104846 AAT--------ATAGTTATATATATATTTTATATTATATTATATATTTTTTATATCACTT 163104795 Query 112620 aaata-atgggattta-ata--aaattatgagacaatttatagaattatttaaaagaaat 112675 | ||| || ||||| ||| | ||||| | | | ||| || || ||| || | | || Sbjct 163104794 ATATATATATAATTTATATAATATATTAT-ATATATTTTTTATAA-TATATATTATATAT 163104737 Query 112676 atttattatataagaaagaatatattattatttgt---tattataaattttattttat-- 112730 |||| ||||||| | |||||| |||| ||| | ||||||| ||||| || ||| Sbjct 163104736 ATTT-TTATATATATATTAATATA-TATTTTTTATATATATTATATATTTTTTTATATAA 163104679 Query 112731 ctatattaattgtttatgtgggtattgtatatattaaaaagtatgaaaatttata-ttta 112789 ||||| ||| ||||| | |||| |||||||| ||| ||| | | | |||| |||| Sbjct 163104678 TTATATATATT-TTTATAT--ATATTATATATATTTTAAACTAT-ATATTATATATTTTA 163104623 Query 112790 tataatttTGTA 112801 |||| | || || Sbjct 163104622 TATATTATTATA 163104611 >seq1345 Length=61309027 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| |||||||||| | || ||||||| || |||| || ||| ||| | ||| Sbjct 54758889 TTCCTTCTGGATGTTATGGA-GAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 54758947 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || | || |||||||||||||||||||| || || || | | Sbjct 54758948 TTGATGTAGGAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 54759007 Query 10549 TTAATCATTCTAATGAAGATTTTATAAT-AAATAGAGGAGATAGAATATCTCAATTAATA 10607 ||||| || || ||| | ||| | | ||| | ||| ||| |||| | || | || Sbjct 54759008 TTAATTTTTGCAAAGAAAAGTTTGAAGTCAAAAAAAGGTGATCGAATTGCACAGCTCATT 54759067 Query 10608 TGTGAA-AAAATTTTATATCCTAAAAT 10633 |||||| | |||| ||||| |||| Sbjct 54759068 TGTGAACGGATTTTTTTATCCAGAAAT 54759094 >seq1283 Length=83181570 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| || || ||||| | |||||| ||||| ||||| || | || Sbjct 46388122 CCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGAC 46388181 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| ||| |||||||||||| |||||| Sbjct 46388182 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 46388241 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 46388242 ATTCCTTCCTTATCCTG 46388258 >seq1197 Length=81586097 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 51799176 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 51799234 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | || || |||||||| |||| ||| |||||||| ||||| Sbjct 51799235 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 51799294 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 51799295 AATTCCTTCCTTATCCTG 51799312 >seq252 Length=181907262 Score = 93.3 bits (102), Expect = 6e-14 Identities = 223/318 (70%), Gaps = 42/318 (13%) Strand=Plus/Plus Query 112498 TATAATATATTTTA-AATCGAATACTT-TAAATGATATTTTATATAAATTATGTTCTGAA 112555 |||||||||| ||| ||| ||| || || || |||||||||||| | ||| Sbjct 71157832 TATAATATATATTATAAT---ATATTTATATATTATATTTTATATATAATAT-------- 71157880 Query 112556 GATATTATA-ATTCCCGATGATAGttatataaataatttaaattataatgatatgtttat 112614 |||||||| ||| || ||| |||||| |||||| || ||||| || |||| | ||| Sbjct 71157881 -ATATTATATATT----AT-ATATTTATAT-AATAATATATATTATTAT-ATAT-TATAT 71157931 Query 112615 atctga-aataatgggatttaataaaat-tatgagacaatttatagaattatttaaaaga 112672 || | | |||||| || | |||| || ||| | | | ||||| || | || | | Sbjct 71157932 ATATTATAATAAT---ATATTATAATATATATTATATATATTATAATATAA--TATTATA 71157986 Query 112673 aatatttattatataagaaagaatatattattatttgttattataaattttattttatct 112732 |||| |||||||| || |||||||| || | |||| ||| || ||||| ||| | Sbjct 71157987 AATA---ATTATATA--TAATTATATATTA--ATATATTATAATATATATTATTATATTT 71158039 Query 112733 atattaattgtttatgtgggtattgtatatattaaaaagtatgaaaatttatatttatat 112792 |||| ||| | ||| | ||| |||||||||| || ||| | | | ||||||||||| Sbjct 71158040 ATAT--ATTATATATTTATATATAGTATATATTATAA--TAT-ATATTATATATTTATAT 71158094 Query 112793 aatttTGTAATCATAAAT 112810 |||| | || | ||| || Sbjct 71158095 AATTATATATTTATATAT 71158112 >seq1091 Length=100452976 Score = 86.0 bits (94), Expect = 9e-12 Identities = 183/255 (72%), Gaps = 29/255 (11%) Strand=Plus/Minus Query 112497 ATATA-ATATATTTTAAATCGA-ATACTTTAAATGATATTTTATATAAAT------TATG 112548 ||||| |||||||||| || || ||| |||| || |||||||||||| || |||| Sbjct 9381595 ATATAGATATATTTTATATAGATATATTTTATAT-ATATTTTATATAGATATATTATATG 9381537 Query 112549 TTCTGAAGATA-TTATAATTCCCGATGATAGttatataaataatttaaattataatgata 112607 | | | ||| |||| || || ||| ||||||| ||||| || | ||| ||| Sbjct 9381536 TATTTTATATAGATATATTT---TATAATA-TTATATATATAATATATAATAT----ATA 9381485 Query 112608 tgtttatatctgaaata-atgggatttaataaaattatgagacaatttataga-attatt 112665 | ||||||| | |||| || |||| ||| | || | | | |||||| | ||||| Sbjct 9381484 T-TTTATATATATAATATAT---ATTTTATATATATAATATATATTTTATATATATTATA 9381429 Query 112666 taaaagaaatatttattatata-agaaagaatatattattatttgttat-tataaatttt 112723 || || | |||||| ||||||| | | | |||||||| |||| | |||| ||| ||| | Sbjct 9381428 TATAATATATATTT-TTATATATATATATAATATATT-TTATATATTATATAT-AATATA 9381372 Query 112724 attttatctatatta 112738 ||||||| ||||||| Sbjct 9381371 ATTTTATATATATTA 9381357 >seq401 Length=166211670 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTA-GATTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||| | | |||| || || || || || || Sbjct 161377046 CCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGA-ATGTTGTAGTCAGA 161376988 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || | | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 161376987 CAG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 161376930 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 161376929 AATTCCTTCCTTATCCTG 161376912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743113287438080