Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1588 248 8e-61 seq1481 248 8e-61 seq793 111 1e-19 seq106 98.7 9e-16 seq1 91.5 1e-13 >seq1588 Length=553333 Score = 248 bits (274), Expect = 8e-61 Identities = 527/781 (67%), Gaps = 18/781 (2%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| || || | ||| ||| |||||| | |||||| ||| ||| Sbjct 230606 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 230547 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||| | | |||||||| || || |||| | ||||||||| | Sbjct 230546 TCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 230492 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 || |||| ||||| || | | | | | || | |||| ||||| || | Sbjct 230491 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 230432 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| || |||||||| || || || || ||||||| | || ||||| || || | | Sbjct 230431 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 230372 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || | || | || |||||| | ||| || | || ||||| | Sbjct 230371 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 230312 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| || | | || ||||| | | |||||| ||||| | |||||| Sbjct 230311 CTCTCACTTT-CTCCT---CCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 230256 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || ||||| || || || ||| Sbjct 230255 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 230196 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || |||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 230195 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 230136 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| || || || || | || ||||| || || || ||| | | | |||| Sbjct 230135 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 230078 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| ||| || | || ||||| ||| | || || ||||| || | Sbjct 230077 AGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGA 230019 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | ||||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 230018 GAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 229959 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 229958 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 229899 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 || | ||| | || | || ||||| || ||||| ||||| || |||||||| | Sbjct 229898 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGA 229839 Query 16659 A 16659 | Sbjct 229838 A 229838 >seq1481 Length=155549662 Score = 248 bits (274), Expect = 8e-61 Identities = 527/781 (67%), Gaps = 18/781 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| || || | ||| ||| |||||| | |||||| ||| ||| Sbjct 44508327 TTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCC 44508386 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||| | | |||||||| || || |||| | ||||||||| | Sbjct 44508387 TCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44508441 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 || |||| ||||| || | | | | | || | |||| ||||| || | Sbjct 44508442 CCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44508501 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 ||| || |||||||| || || || || ||||||| | || ||||| || || | | Sbjct 44508502 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 44508561 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 | ||||| | || || || | || | || |||||| | ||| || | || ||||| | Sbjct 44508562 TCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTT 44508621 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTT----AATAAGTGTTTAAACATTATACAAGCA 16240 |||| ||| || | | || ||||| | | |||||| ||||| | |||||| Sbjct 44508622 CTCTCACTTT-CTCCT---CCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44508677 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || ||||| || || || ||| Sbjct 44508678 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 44508737 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || |||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 44508738 ATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCT 44508797 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| || || || || | || ||||| || || || ||| | | | |||| Sbjct 44508798 TCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC--CCAATCC 44508855 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | ||||||| ||| || | || ||||| ||| | || || ||||| || | Sbjct 44508856 AGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATTGAAGA 44508914 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | ||||||||| |||| || ||||| || || || | |||||||||||| | Sbjct 44508915 GAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAG 44508974 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 44508975 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAA 44509034 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 || | ||| | || | || ||||| || ||||| ||||| || |||||||| | Sbjct 44509035 CTATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGA 44509094 Query 16659 A 16659 | Sbjct 44509095 A 44509095 Score = 111 bits (122), Expect = 1e-19 Identities = 302/458 (66%), Gaps = 7/458 (2%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || |||||||| || Sbjct 144080947 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144080888 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144080887 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144080828 Query 16355 ATACCTTCAACTGCGGCAAA---TGCAACCAA-TCGCTCACCGTACGTTCTAtttttact 16410 | | ||| || |||||| |||| ||| || || || | || | ||| | Sbjct 144080827 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144080768 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 | ||||| ||||| ||| || | || |||||| ||| | || || || Sbjct 144080767 CCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACAG-GCATCGTTTCAATGGC 144080709 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 | | || | | | | |||||||| ||||| ||||| || || || || | | ||| Sbjct 144080708 ACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 144080651 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 ||||| ||||| || || || || || || || || ||||| ||||| | ||| | Sbjct 144080650 TATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 144080591 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || | ||||| ||| ||| | |||||||| | | ||| ||||| | || Sbjct 144080590 AATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACATGC 144080531 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAttttttt 16688 |||||| || || || || || ||||||| | ||| Sbjct 144080530 TGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 144080493 >seq793 Length=147911612 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 104129964 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAAAAC 104130023 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 104130024 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 104130083 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 104130084 CCATAAAATCAAAAGGATTTTCTG 104130107 >seq106 Length=111504155 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 10258782 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10258723 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 10258722 ACAACACGTTCACC 10258709 >seq1 Length=228573443 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| || ||||| || || || | |||||||||||| ||||| | | Sbjct 139565390 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 139565449 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | ||||| || || || || |||| || || | ||||| | || || ||||| | Sbjct 139565450 TTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGC 139565509 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 ||| | || | |||||||| || ||||| ||||| || |||||||| || || || Sbjct 139565510 TAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 139565567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462255022551400