Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1155 1568 0.0 seq866 123 2e-23 >seq1155 Length=83230942 Score = 1568 bits (1738), Expect = 0.0 Identities = 1371/1696 (81%), Gaps = 51/1696 (3%) Strand=Plus/Plus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA-----------GGGTCTT--A 107144 ||| ||||| || |||| |||||||| |||||| |||| ||| ||| | Sbjct 40424078 GCTAGTTTGTAGGGTCAGATTACAGATCTCCATCAACAAACCAGATGTAAGGGGCTTCTA 40424137 Query 107145 GGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGG 107204 |||||| ||| ||| ||||| |||||| | |||| || | | ||| ||||| | ||| Sbjct 40424138 GGCAGGTCTTTACTAAGGATTTTTGTCCAGGTAAGAAATATTT-TTTGTCATCAGTTTGG 40424196 Query 107205 AGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCC 107258 | |||| ||||||||| |||| |||||||||||| | |||||||||||||||||| Sbjct 40424197 AATTGAGCTTGATGTTTCTGGGAATGATTAGTTTGTAACTGGAGGCATTTTGTTCTGTCC 40424256 Query 107259 AAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCAT 107314 |||||| ||||||||| |||| ||||||| | ||| |||| |||||||| | | Sbjct 40424257 AAGGATTGTGTCCTCCTCCTCCTTCCCTGTGCTCGGTCTCCACCTG-TCTCCCATTCTGT 40424315 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 || ||||| | ||||||| || || |||| | | ||| | |||||||||||||||| Sbjct 40424316 GACGATGGTTCAATGGAAGA-GA--CTCTGCCAGCGGCATTACTTGTGGGCCCTGGGCTG 40424372 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 |||||||||||||||| ||| |||||| ||| || ||||||| || ||||| || Sbjct 40424373 CTATATGCTGCTGGCCACTGTGGCTCTGAAACTGTCTTTCAGGTTAAAGTGTGACTCTGA 40424432 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 ||||| ||||||||||||||| | || || ||| |||||||| | || ||||| || Sbjct 40424433 CCACTTGGGTCTGGAGTCCAGGGAATCTCAAAGCCAGTACTGTAGGAATATCTTGTATAA 40424492 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 | |||||| |||||||||||||| || ||||||||||| ||| |||| ||||||||||| Sbjct 40424493 TTTCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGGTCACCCGAGGGGACCA 40424552 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 || |||||| | ||||| | || | |||||||| || ||||| ||||| |||| | Sbjct 40424553 AGAGGCAGTGCTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGAAGCGAGAGCCTTT 40424612 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 ||| | |||| | |||||| | | |||||||||||||||| ||||||||| ||||||| Sbjct 40424613 CACAGACACCCACTACCTCTCCCTCACCAGAGACTGTGAGCACTTCAAGGCTGAAAGGAA 40424672 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| ||||| Sbjct 40424673 GTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATACTCTATGGT 40424732 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | | |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| Sbjct 40424733 GATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGAA 40424792 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||| |||| ||||||| |||||||||||| |||||||||||||||||||| || Sbjct 40424793 CATATACTGCATCCATGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCGGTCAAAGC 40424852 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||||||| |||||||| ||||||||||| ||||||||| |||| | |||||||||||| Sbjct 40424853 AATTATTTCTTGCTTCCCAAATGTCTTCATAGCCAGTAAGCTGGTTCGGGTGGTTTATGC 40424912 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 40424913 CTCCTGGTCCAGGGTGCAAGCTGACATCAACTGCATGGAAGACTTGCTCCAGAGCTCAGT 40424972 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||| |||||| || Sbjct 40424973 GCCGTGGAAATACTTCCTGAATACATGTGGGACGGACTTTCCTATAAAGAGCAATGCGGA 40425032 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||||| ||| |||||||||||||| || | ||| || |||||||| ||||||||| | Sbjct 40425033 GATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGTCAGAGGTACCTCC 40425092 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCC 108151 | || |||| ||| ||||||||||| | || |||| ||| ||||||| | ||| Sbjct 40425093 TAAGCACAAAGAAACCCGCTGGAAATATCACTTTGAGGTAGTGGGAGACACATTACACCT 40425152 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| || Sbjct 40425153 AACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGTA 40425212 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 ||||||| || |||| || ||||||||||| || | ||||||||||||||| ||| Sbjct 40425213 CATTGTGGCTTCCCGAGATTTCGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAACT 40425272 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||||| |||||||| |||||||| || |||||||||||||||||||||||||| Sbjct 40425273 GATTGAATGGGTAAAAGACACTTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG 40425332 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| | ||||||||||||||||||||| | |||||||||||| |||||||||||||||| Sbjct 40425333 TGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGAC 40425392 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||||| |||||||||||| || |||||||| || | ||| || || Sbjct 40425393 TTCTATTGCCAGGCTGGTCAAGTGGCAGGGTCATGAGGGAGACATCGATAAGGGTGCTCC 40425452 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 |||||| ||||||||||||||||| | | |||| ||||||||||| ||||| |||||| | Sbjct 40425453 TTATGCTCCCTGCTCTGGAATCCACCAGCGGGCTATCTGCATTTATGGGGCTGGGGACTT 40425512 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | ||||| || || ||||||||||| ||||| |||||||||||||| | ||| ||||| Sbjct 40425513 GAATTGGATGCTTCACAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGA 40425572 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 ||| | || |||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 40425573 TAATGCTCTTCAGTGCTTAGAAGAATACCTACGTTATAAGGCCATCTATGGGACTGAACT 40425632 Query 108632 TTGAG-----CT------GCA-------CTGTGGGCCA-GGGACTGTGCCAACATGCCCA 108672 ||||| || ||| ||||||| || | | ||| | ||||||| || Sbjct 40425633 TTGAGACACACTATGAGGGCATTGCTACCTGTGGGGCACGAGCATGTACAAACATGCTCA 40425692 Query 108673 GGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCA 108732 | | | |||| || |||| ||||||| ||| |||||| || ||| | |||||||| | Sbjct 40425693 GAACTTGCTGGGACAGTGT-GGGTGGGAGACCAGGGCTTTGCAATTCGTGGCATCCTTTA 40425751 Query 108733 GGGTCAGAGGGCTGCT 108748 || | ||||||||||| Sbjct 40425752 GGATAAGAGGGCTGCT 40425767 >seq866 Length=116767853 Score = 123 bits (136), Expect = 2e-23 Identities = 570/896 (64%), Gaps = 49/896 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || || || || || || || ||||| ||| | ||| Sbjct 53756245 CCCCTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 53756304 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | ||||| | Sbjct 53756305 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 53756364 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 53756365 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 53756421 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || || |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 53756422 TGTTTTAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 53756481 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | || ||| | | | | ||||| | ||| Sbjct 53756482 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAT---CTCTATGCGATGAGTGCAAACTGG 53756538 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 53756539 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 53756598 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAG 108098 | |||||| |||| | ||| | |||| |||| | ||| | || || | Sbjct 53756599 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCCAT 53756658 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGT---------------GACAGACACA 108143 ||| || | | ||||| | || |||||||| |||| ||||| Sbjct 53756659 ---AAAGAAGAAAGGTGGAAGAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 53756715 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| ||| ||||| | || | ||| | || | || Sbjct 53756716 GGG------ACTGTCAAAATGCTT---CCTCCACTCGAAAC---ACCTCTTTTTTCTGGC 53756763 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| || |||| | | | | | ||| |||| || | || ||| | Sbjct 53756764 AGTGCCTACTTCGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATC 53756823 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 53756824 CAAAAGTTTATGGAGTGGGCACAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 53756883 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCT 108381 | || | ||| || | | || ||||| | || |||| || |||||| | | | Sbjct 53756884 ATCCAAAGGATTCC-TGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTATGATTTGT 53756941 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||||||| ||||| ||||| || Sbjct 53756942 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCA 53757001 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| |||| ||||| | | | | ||||||| || | Sbjct 53757002 AGGGTGCTCCCTACCCTCCCTGCGATGGAGTCCATGTGCGCTCAGTGTGCATTTTTGGAG 53757061 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 53757062 CTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGAC 53757117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348080135063826