Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1283 98.7 8e-16 seq1056 89.7 4e-13 >seq1283 Length=83181570 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || ||||| || ||||||||||| | | | | |||| Sbjct 34932451 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATCT 34932510 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCA-CGCCTTCCTTATC 18232 |||| || ||||| ||| |||| || || || || | |||||| | |||||| ||||| Sbjct 34932511 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGT-CACGGGGATTGCCTTCTTTATC 34932569 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||||| | | | | |||| ||| |||||| ||||| ||||||| | Sbjct 34932570 TTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGAT 34932629 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || |||||||| Sbjct 34932630 CTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 34932665 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || || || || || ||||||||||| | | || | |||| Sbjct 38692102 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 38692043 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | |||||||||||| Sbjct 38692042 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 38691983 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 38691982 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 38691923 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| | ||||| || || || |||||||| Sbjct 38691922 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 38691888 >seq1056 Length=137163284 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 128406256 AGCACCAGGTGCAGGGT-GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 128406314 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 128406315 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 128406374 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| |||| ||||||| | Sbjct 128406375 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 128406433 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || ||||| |||||||| Sbjct 128406434 CTTGCCAGTGAGTGTCTTCACAAAGATTTGCAT 128406466 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 128406939 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 128406998 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 128406999 TCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 128407058 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| |||| ||||||| | Sbjct 128407059 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 128407117 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||| || || || |||||||| Sbjct 128407118 CTTGCCAGTGAGTGTCTTCACGAAGATTTGCAT 128407150 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 128407849 AGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 128407908 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | || || || || || | ||||||||| || Sbjct 128407909 TCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 128407968 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||| ||||| | | | ||||||| ||||||| |||| ||||||| | Sbjct 128407969 TGGATCT-TTGCTTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 128408027 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| || | ||| || || || || ||||| Sbjct 128408028 TTTGCCAGTGAGTGTCTTCACGAAGATCTGCAT 128408060 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 128408077 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 128408136 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| || || || || || || | |||||||||||| Sbjct 128408137 TCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 128408196 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 128408197 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTC 128408256 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| || || || || || |||||| Sbjct 128408257 TTACCAGTCAGAGTCTTCACGAAGATCTGCATT 128408289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| | || || ||||| || ||||||||||| | || || || |||| Sbjct 128407167 AGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 128407226 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || ||||| || | |||||||||||| Sbjct 128407227 TCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTATCT 128407286 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 128407287 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 128407346 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 128407347 TTACCAGTCAGGGTCTTCACGAAGATCTGCAT 128407378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379138500938505