Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq401 102 7e-17 >seq401 Length=166211670 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || ||| | || ||||| || || ||| |||| ||||| | || Sbjct 24856673 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 24856614 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| || | ||| |||| |||||| | || || ||| | || |||||||| Sbjct 24856613 GACACCACTGAGAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACTTGACCAG 24856554 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| | |||| |||||||||||| ||||| ||| | ||| | || | || | Sbjct 24856553 CAACGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTTAGACTGCAAC 24856494 Query 25012 ATACAGAAAGAGGCCA 25027 || ||||||||| ||| Sbjct 24856493 ATCCAGAAAGAGTCCA 24856478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418077395442080