Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1024 116 3e-21 seq1197 105 6e-18 seq1395 100 3e-16 seq1056 98.7 9e-16 seq1283 96.9 3e-15 seq1 84.2 2e-11 >seq1024 Length=135753878 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 4037767 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 4037708 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| ||||| ||| Sbjct 4037707 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 4037648 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || ||| ||||| ||||| || Sbjct 4037647 CCTGTTTCCGTCTGAGACTCAATGATGGC 4037619 >seq1197 Length=81586097 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 51799405 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 51799346 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 51799345 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 51799286 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| ||| ||||||| | | | ||| || || || Sbjct 51799285 CAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACTTTGTCTGACTA 51799227 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 51799226 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 51799185 >seq1395 Length=66533130 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 13/219 (6%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || ||||| | ||| |||||| || | |||||||| ||| Sbjct 38578104 ATGCAGATTTTCGTGAAAACCCTTACAGGGAGAACCATCACCCTCAAGGTTGAACCCTCC 38578163 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || || || || ||| | ||| |||||||| | || || || | Sbjct 38578164 GATACGATAGGAAATGTAAAGACCAAGA-TCCAGGATAAGGAAGGAATTCCTCCTGATCG 38578222 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | |||||||| |||||||| || ||||||| || || || || || Sbjct 38578223 GCAAAGACTAATATTTGCTGGCAAGCAACTGGAAGA-----TGTCT------GACTACAA 38578271 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||||| || | ||||| Sbjct 38578272 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 38578310 >seq1056 Length=137163284 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || |||||| |||| ||||| || Sbjct 128408288 ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGT 128408229 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || || || ||||||||| | || || ||||| Sbjct 128408228 GACACCATCGAGAATGTCAAGGCAAAG-ATCCAAGATAAGGAAGGCATCCCTCCTGACCA 128408170 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| |||||| ||||||| || || || || || Sbjct 128408169 GCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 128408110 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || || || ||||| || Sbjct 128408109 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 128408077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || ||||| |||| || || ||| Sbjct 128406016 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAGGTGGAGCCGAGT 128405957 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 128405956 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 128405898 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || ||||| |||||| ||||||| | | | || || || || | Sbjct 128405897 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 128405839 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| || |||| || | ||||||| ||| Sbjct 128405838 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 128405789 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| |||| || || || Sbjct 128406694 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGT 128406635 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 128406634 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 128406576 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| |||||| ||||||| | || || || || || Sbjct 128406575 GCAGAGGTTGATCTTTGCTGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 128406516 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || | || ||||| || Sbjct 128406515 CATCCAGAAAGAGTCCACCTTGCACCTGGTGCT 128406483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || |||||||| |||||| | || || || || Sbjct 128408060 ATGCAGATCTTCGTGAAGACACTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 128408001 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| || ||| | |||||||||||| | || || ||||| Sbjct 128408000 GACACCATCGAGAACGTCAAAGCAAAGA-TCCAAGACAAGGAAGGCATTCCTCCTGACCA 128407942 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| || ||| ||||||| || || || || || Sbjct 128407941 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 128407882 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || || || ||||| || Sbjct 128407881 CATCCAGAAAGAGTCTACCCTGCACCTGGTGCT 128407849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 128407150 ATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 128407091 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| || ||| | |||||||||||| | || || ||||| Sbjct 128407090 GACACCATCGAGAACGTCAAAGCAAAGA-TCCAAGACAAGGAAGGCATTCCTCCTGACCA 128407032 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || || || || ||| ||||||| || || || || || Sbjct 128407031 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 128406972 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || || || ||||| || Sbjct 128406971 CATCCAGAAAGAGTCTACCCTGCACCTGGTGCT 128406939 >seq1283 Length=83181570 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| || || || || ||||| || |||||| | || || || Sbjct 38691886 TCAAA-ATGCAGATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAG 38691944 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | || ||| ||||||||| | || ||| Sbjct 38691945 CCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCC 38692004 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 38692005 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGAC 38692064 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| || |||||||| || | ||||| || |||| Sbjct 38692065 TACAACATCCAGAAGGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGGTA 38692119 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 38692119 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 38692178 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || ||| || |||||| | || ||||||||| Sbjct 38692179 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 38692238 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 38692239 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 38692298 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || ||||| || | ||||| || |||| Sbjct 38692299 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTA 38692347 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || || Sbjct 38692347 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 38692406 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || || || |||||| | || ||||||||| Sbjct 38692407 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCTCCCGACCAG 38692466 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| ||| | || || ||| Sbjct 38692467 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 38692526 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| ||||| || || ||||| || | |||||||| || Sbjct 38692527 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 38692573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || | |||| || | ||||||||| Sbjct 46388351 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACAACCACCCTCAAGGTTGAACCG 46388292 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || | | |||| || || | || ||| |||||||| | || || || Sbjct 46388291 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 46388232 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | | || || |||||||| || ||||||| | ||| ||| || | || Sbjct 46388231 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGGCTA 46388173 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||||||||| || ||||||||| | || | |||||| | || ||| Sbjct 46388172 CAATATTCAAAAAGAGTCTACTCTTCATTTTGTGTTGAGACTGCGTGGTGGT 46388121 >seq1 Length=228573443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/218 (70%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 196892218 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAG 196892160 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGC 31304 || |||| |||||| || || | |||| | ||| ||||||||| | | | Sbjct 196892159 CCCAGTGACACCATCGAAAATGTGAAG--GCCAATATCCAGGATAAGGAAGGCATCCTCC 196892102 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC 31363 ||||||||||| | || || || || |||| ||| | ||||| | || ||| | Sbjct 196892101 CCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTAGAAGA-TGGCTGCACTCTTTCT 196892043 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || ||||| ||||| || | ||||| Sbjct 196892042 GACTACAACATCCAGAAAGAGTCGACCCTGTACCTGGT 196892005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445518726616080