Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1588 273 2e-68 seq1481 273 2e-68 seq106 116 3e-21 seq793 111 1e-19 seq1 96.9 3e-15 seq1024 93.3 4e-14 >seq1588 Length=553333 Score = 273 bits (302), Expect = 2e-68 Identities = 538/786 (68%), Gaps = 21/786 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 |||||||| | | ||| | ||| |||||| | ||||| || | |||| | || || Sbjct 230578 ATTCTCTTTTGGACTTGACACCACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAA 230519 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| | ||||| |||| |||| ||||| ||| || | | ||| Sbjct 230518 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCC 230464 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || | | ||| ||||| || || || || || || Sbjct 230463 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 230404 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||||| | |||||||| || || || | ||| || | || | || | || || Sbjct 230403 CTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 230344 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTT---CCTTAGATGGTGG 11604 | |||||| | ||| |||| || ||||| | | |||| ||| |||||| Sbjct 230343 TTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTTTCTCCTCCGATGGTTT 230287 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 230286 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 230227 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| ||||| || | || |||||| ||||||||| || | ||| ||||| Sbjct 230226 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 230167 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| |||||||||||||| || || || || || || || ||||| || | ||| Sbjct 230166 CGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTC 230107 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| ||||||||| || ||||| || || Sbjct 230106 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGAC 230047 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| | ||| || || || | | |||| | |||||| | |||| | | Sbjct 230046 ACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC--CTTTTCTTTGGGATCTTTGATG 229990 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 229989 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 229930 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| || || |||| | ||| || || | ||||| ||| | ||||| Sbjct 229929 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATT 229871 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||||| || |||||||| | |||||| || | || | ||| |||||| ||| | Sbjct 229870 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCT 229811 Query 12079 TTCGTC 12084 || || Sbjct 229810 CTCCTC 229805 >seq1481 Length=155549662 Score = 273 bits (302), Expect = 2e-68 Identities = 538/786 (68%), Gaps = 21/786 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 |||||||| | | ||| | ||| |||||| | ||||| || | |||| | || || Sbjct 44508355 ATTCTCTTTTGGACTTGACACCACTCCCATCCTCTGATACTCGCCTACTCCCCTCTCAAA 44508414 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || |||||||| | ||||| |||| |||| ||||| ||| || | | ||| Sbjct 44508415 GAAGTTAGTCTTTC-----AGTGAAATATTCTCCGTAAAGTCAAATGGGCTCTCTACTCC 44508469 Query 11428 GAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTG 11487 ||| || || | |||| | || | | ||| ||||| || || || || || || Sbjct 44508470 GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTG 44508529 Query 11488 AGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTC 11547 ||||| | |||||||| || || || | ||| || | || | || | || || Sbjct 44508530 CTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTC 44508589 Query 11548 CTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTT---CCTTAGATGGTGG 11604 | |||||| | ||| |||| || ||||| | | |||| ||| |||||| Sbjct 44508590 TTGTTCTATCTGAACAGCATTGATAATTATTTC---TCTCACTTTCTCCTCCGATGGTTT 44508646 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| | ||||| ||||| || || ||||||||||| |||||||| || ||||| || Sbjct 44508647 GTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 44508706 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || |||||||| ||||| || | || |||||| ||||||||| || | ||| ||||| Sbjct 44508707 AATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATAT 44508766 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| |||||||||||||| || || || || || || || ||||| || | ||| Sbjct 44508767 CGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTACTGCAGCGAAGGCTACAACACGTTC 44508826 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| ||||||||| || ||||| || || Sbjct 44508827 ACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGAC 44508886 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| | ||| || || || | | |||| | |||||| | |||| | | Sbjct 44508887 ACAAGGCATCG-TTCAATGGCATTGAAGAGAAATTC--CTTTTCTTTGGGATCTTTGATG 44508943 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 44508944 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 44509003 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTAC-ATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| || || |||| | ||| || || | ||||| ||| | ||||| Sbjct 44509004 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGGCT-AAATCGCTCCACCAAATT 44509062 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||||| || |||||||| | |||||| || | || | ||| |||||| ||| | Sbjct 44509063 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAGAACATGGGATATAAAATATCT 44509122 Query 12079 TTCGTC 12084 || || Sbjct 44509123 CTCCTC 44509128 Score = 150 bits (166), Expect = 2e-31 Identities = 316/463 (68%), Gaps = 20/463 (4%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| |||||||| | Sbjct 144080947 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144080888 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 144080887 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144080828 Query 11750 ATTCCCTCCACAGCTGCAAATGC----TACTACTCTTTCTCCAT--ATA----CCTTGTT 11799 | | ||||| ||||| || | | || | |||||||| || | ||||| Sbjct 144080827 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144080768 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | | ||||| | ||||| | || ||||| || || || ||| ||||| || Sbjct 144080767 CCCA---ATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAAT 144080712 Query 11860 AGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || | | | |||| | ||||| | |||||| ||| |||||| || || | | | Sbjct 144080711 GGCACTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGA 144080656 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||| ||||| ||||| || ||||| ||||| ||||| || |||||||| || | Sbjct 144080655 TTATTTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTT 144080596 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| | | | || || | |||| |||| | || || |||| || || |||||| Sbjct 144080595 TCTGTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCA 144080536 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTT 12080 | | |||||| || || || ||||| |||||| ||| ||| Sbjct 144080535 CATGCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTT 144080493 >seq106 Length=111504155 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| ||||| |||||||| || || ||||| || ||||| ||| Sbjct 10258782 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10258723 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 10258722 ACAACACGTTCACC 10258709 >seq793 Length=147911612 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 104140656 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 104140715 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| ||||| | Sbjct 104140716 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 104140775 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 104140776 CCACCACTCTTTCCCC 104140791 >seq1 Length=228573443 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| || || || || | | |||||||||||| ||||| | |||||||| || Sbjct 139565400 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGC 139565459 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || |||||||||| || || |||| | ||| || || ||||| || Sbjct 139565460 AATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 139565519 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAG 12057 | | || || |||||||| || |||||||| | |||||| || || || Sbjct 139565520 CACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAG 139565567 >seq1024 Length=135753878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 4046796 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 4046737 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 4046736 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 4046677 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 4046676 CTGTTTCTTATACCAT 4046661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468264481764560