Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1332 143 2e-29 seq183 111 1e-19 seq301 89.7 4e-13 >seq1332 Length=78221452 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 17408362 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 17408421 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || |||||||||||||| | || |||||||||||||||||||||||||| | Sbjct 17408422 GCACACCGAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 17408481 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 17408482 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 17408525 >seq183 Length=202621043 Score = 111 bits (122), Expect = 1e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || | |||| || ||||| || ||||| || || ||||| | | Sbjct 96549079 TTTAAGGCATCATCCAAACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 96549138 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 96549139 TCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 96549198 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || ||| | || || | || | Sbjct 96549199 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCCTCTACTGAAGAAGTTGTG 96549258 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| || || || ||||| |||| ||||| Sbjct 96549259 GTCATTCTCTGGAAATACCTGAATTCATTCCTGAGCGGCGGCCTGGGCAGGTCCCCGTTC 96549318 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | | || || || ||||||||||| Sbjct 96549319 TTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 96549359 >seq301 Length=175400573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || |||| || || ||||| | |||| |||| | || | || Sbjct 31615105 TTCTGGCAAGAAAATGAGCTCGTTGTGGAGGTTCCTTGAGTTCTTTGCTGAGAACTAAAT 31615164 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||| | | | ||| || ||||| |||| ||||| ||||| || | | | || Sbjct 31615165 TAATTCTATCCTTTAAAGGTCGATTCTTCCCAGGAATGGAGAACCAGGTCTTCCTACACA 31615224 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 ||| |||| ||||| || |||| | || || | | | |||||| |||| |||||| Sbjct 31615225 AAATCACCAGATTCTGTTTACCTTCTACTGAAGAGATTGT-GTCATTCTCTGGAAATACC 31615283 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||| || || || |||||| |||| ||||| || || || || | |||| Sbjct 31615284 TAAATTCATTCCTGAGCGGCGGCCAGGGCAGGTCGCCGTTCTTGCCGATGCCCA--TGTT 31615341 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | | || || ||||||||||| Sbjct 31615342 CTGAGACACAGCGACGATGCAGTT 31615365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427544264249520