Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1588 123 2e-23 seq1481 123 2e-23 >seq1588 Length=553333 Score = 123 bits (136), Expect = 2e-23 Identities = 395/596 (66%), Gaps = 40/596 (7%) Strand=Plus/Plus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || |||||| ||||||||||| || | || Sbjct 229718 ATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGAC 229777 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 | || || ||| ||| | || |||||| || | || || || || | Sbjct 229778 ATTCGGCACTGG---GAATCCCCGAAGCCCGAGG---AGAGATATTTTATATCCCATGTT 229831 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 |||| ||||||||| ||| |||||||| ||| || || | ||| || |||| Sbjct 229832 CTGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTT 229888 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || ||| | | | ||| |||||||| | ||||||||| || || | || || Sbjct 229889 AGCCAAATAGTTC----AGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCAT 229944 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| |||||||||||| || || ||| ||| ||| | | ||||| Sbjct 229945 GGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACAC-TTAC-ATC-AAAGATCC 230001 Query 22636 -AATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || || | ||| | |||| || |||| ||||| ||||| || ||||| Sbjct 230002 CAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAGAAGGC 230060 Query 22692 ACAGTGGGCTGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTCTC 22746 | | ||||| | |||| || | ||| | | | |||| | | |||| | Sbjct 230061 AGATTGGGC----CTTGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACGTGTT 230115 Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGG 22806 | ||||| || || || |||||| || | |||||||| || ||||| | ||||||||| Sbjct 230116 GTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 230175 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || |||||||| | ||||| || | |||||||||| || | |||||| | || Sbjct 230176 CTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 230235 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 230236 GAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCAAACACCTGGTACACAAACC 230291 >seq1481 Length=155549662 Score = 123 bits (136), Expect = 2e-23 Identities = 395/596 (66%), Gaps = 40/596 (7%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| |||||||| | || || || |||||| ||||||||||| || | || Sbjct 44509215 ATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCGAGGAGGTGGACCTGTCCAAGGAC 44509156 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 | || || ||| ||| | || |||||| || | || || || || | Sbjct 44509155 ATTCGGCACTGG---GAATCCCCGAAGCCCGAGG---AGAGATATTTTATATCCCATGTT 44509102 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 |||| ||||||||| ||| |||||||| ||| || || | ||| || |||| Sbjct 44509101 CTGGTTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTT 44509045 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || ||| | | | ||| |||||||| | ||||||||| || || | || || Sbjct 44509044 AGCCAAATAGTTC----AGATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCAT 44508989 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| |||||||||||| || || ||| ||| ||| | | ||||| Sbjct 44508988 GGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACAC-TTAC-ATC-AAAGATCC 44508932 Query 22636 -AATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || || | ||| | |||| || |||| ||||| ||||| || ||||| Sbjct 44508931 CAAAGAAAAGGAATTTCTCTTCAATGCCATTGAACG-ATGCCTTGTGTCAAGAAGAAGGC 44508873 Query 22692 ACAGTGGGCTGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTCTC 22746 | | ||||| | |||| || | ||| | | | |||| | | |||| | Sbjct 44508872 AGATTGGGC----CTTGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACGTGTT 44508818 Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGG 22806 | ||||| || || || |||||| || | |||||||| || ||||| | ||||||||| Sbjct 44508817 GTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGG 44508758 Query 22807 CTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGAC 22866 || |||||||| | ||||| || | |||||||||| || | |||||| | || Sbjct 44508757 CTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAT 44508698 Query 22867 GAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || ||| |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 44508697 GAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTCAAACACCTGGTACACAAACC 44508642 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || ||| || | | |||||||| || ||||| ||||||||||| Sbjct 144080805 GCCTTTGCCTTGGTGGAAAGCACCTTCTTTTCTGGTTCTTTTGCATTGATATTCTGGCTC 144080864 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||||| || ||||| || | | |||||||| || | |||||| |||| || Sbjct 144080865 AAGAAACAAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGAG 144080924 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| |||||||| |||||||||| Sbjct 144080925 GGTTTACACTGTTACTTTGCTTG 144080947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356040620354947