Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1056 113 4e-20 seq1283 102 8e-17 seq1 86.0 6e-12 >seq1056 Length=137163284 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || || |||| | ||||| ||||| || || Sbjct 128406954 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 128407013 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| ||| Sbjct 128407014 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTG 128407073 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||||| ||| | |||||||| || | || Sbjct 128407074 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTC 128407133 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 128407134 TTCACGAAGATTTGCAT 128407150 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || || |||| | ||||| ||||| || ||| Sbjct 128407864 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCA 128407923 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| ||| Sbjct 128407924 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTG 128407983 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||||| ||| | || ||||| || | || Sbjct 128407984 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCAGTGAGTGTC 128408043 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 128408044 TTCACGAAGATCTGCAT 128408060 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-T 139605 || |||| || ||||| | || |||||||| || ||||| || || || |||| | Sbjct 128405799 AAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 128405858 Query 139606 CGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 139665 | | ||||| |||||||| |||||| |||||| | ||||| || ||||| |||||||| Sbjct 128405859 CCA-TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 128405917 Query 139666 TTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| ||| || | | || | ||||| | ||||||||||| | || Sbjct 128405918 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTCGGCTCCACCTCGAGAGT 128405977 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || |||| || || ||||| || ||||| Sbjct 128405978 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 128406016 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || || | ||||| |||||||| ||| Sbjct 128406498 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCA 128406557 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| || Sbjct 128406558 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTG 128406617 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 128406618 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 128406677 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 128406678 TTCACGAAGATCTGCAT 128406694 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || || || | ||||| |||||||| ||| Sbjct 128406726 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCA 128406785 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| ||||| || ||||| ||| ||| || Sbjct 128406786 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTTGCCTTG 128406845 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 128406846 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 128406905 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 128406906 TTCACGAAGATCTGCAT 128406922 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || || | ||||| |||||||| || Sbjct 128407182 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTTCCG 128407241 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | |||||||| ||||| |||||||| || || ||| ||| || Sbjct 128407242 GCAAAGATCAACCTCTGCTGATCAGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTG 128407301 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 128407302 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 128407361 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 128407362 TTCACGAAGATCTGCAT 128407378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| |||||| |||||| | ||||| || ||||| |||||||| || || Sbjct 128407681 TTCCAGCTGTTTTCCAGCA-AGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATC 128407739 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| ||| || | | || | ||||| ||||||||||||| | ||| | || Sbjct 128407740 TTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 128407799 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || |||| || || ||||| || ||||| Sbjct 128407800 CTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 128407832 >seq1283 Length=83181570 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 38692561 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 38692502 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| ||||||||||| Sbjct 38692501 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTA 38692442 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | || | Sbjct 38692441 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 38692382 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 38692381 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 38692346 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| |||||||| || Sbjct 38692045 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTA 38691986 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||||| ||| | Sbjct 38691985 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 38691926 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| || ||||| Sbjct 38691925 GTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 38691891 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || ||||| || || ||||| || || Sbjct 38692345 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 38692286 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| |||||||| Sbjct 38692285 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 38692226 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || || | | ||| | ||||| |||||||||| Sbjct 38692225 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 38692166 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||| |||| || || ||||| || |||||| Sbjct 38692165 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 38692118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||| ||| ||| || ||||||||||| Sbjct 34932281 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCCGATGGGGGGG-ATGCCTTCTTTA 34932339 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||||||||| || | ||| | Sbjct 34932340 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATG 34932399 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 34932400 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 34932435 >seq1 Length=228573443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || | |||| ||||| ||||| | || Sbjct 196892017 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCTGCATGCCT 196892076 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| ||||| | |||||||| || || ||| || || Sbjct 196892077 GCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTC 196892136 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||||| ||| | |||||||| |||| || Sbjct 196892137 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 196892196 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 196892197 TTCACGAAGATCTGCAT 196892213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495788380640800