Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1588 291 8e-74 seq1481 291 8e-74 seq106 123 2e-23 seq1 120 3e-22 >seq1588 Length=553333 Score = 291 bits (322), Expect = 8e-74 Identities = 534/777 (69%), Gaps = 14/777 (2%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| ||| ||| | |||| ||| || | | | || | || ||||| | Sbjct 230604 TAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCCTC 230545 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | |||| | |||||||||||||| ||| |||||| ||||| ||| Sbjct 230544 TGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 230490 Query 13644 ATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||| |||||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 230489 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 230431 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 230430 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 230371 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | ||| | ||||||| |||||| ||||| | | ||||| || Sbjct 230370 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT---TGATAATTAT 230314 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | | || ||||| || || || || ||||| Sbjct 230313 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 230254 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || ||||| || | || ||||| Sbjct 230253 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 230194 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 230193 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 230134 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 |||||||| || |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 230133 TACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCA 230074 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || ||| | |||||| ||||| || | | | Sbjct 230073 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAA 230015 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||||| ||||| | | | ||||| || |||||||| | |||||||||||||| || Sbjct 230014 TTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 229955 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||||| || || || || ||||| || || | ||||| | || ||| Sbjct 229954 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTAT 229895 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 229894 TTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 229838 >seq1481 Length=155549662 Score = 291 bits (322), Expect = 8e-74 Identities = 534/777 (69%), Gaps = 14/777 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| ||| ||| | |||| ||| || | | | || | || ||||| | Sbjct 44508329 TAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCCATCCTC 44508388 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | |||| | |||||||||||||| ||| |||||| ||||| ||| Sbjct 44508389 TGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTCC 44508443 Query 13644 ATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||| |||||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 44508444 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAAG 44508502 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||||||||| ||||| ||||| | |||||||| || || || || Sbjct 44508503 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44508562 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | ||| | ||||||| |||||| ||||| | | ||||| || Sbjct 44508563 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCAT---TGATAATTAT 44508619 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | | || ||||| || || || || ||||| Sbjct 44508620 TTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAA 44508679 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || ||||| || | || ||||| Sbjct 44508680 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 44508739 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 44508740 CGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 44508799 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 |||||||| || |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 44508800 TACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCA 44508859 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || ||| | |||||| ||||| || | | | Sbjct 44508860 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCG-TTCAATGGCATTGAAGAGAAA 44508918 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||||| ||||| | | | ||||| || |||||||| | |||||||||||||| || Sbjct 44508919 TTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 44508978 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||||| || || || || ||||| || || | ||||| | || ||| Sbjct 44508979 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTAT 44509038 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 44509039 TTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44509095 Score = 140 bits (154), Expect = 3e-28 Identities = 302/443 (68%), Gaps = 13/443 (3%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 144080947 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144080888 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| || | ||| ||||| ||||| || || |||||||| Sbjct 144080887 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144080828 Query 13992 ATTCCCTCAACTGCAGCAAACGCT--AT--TAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 | | || || ||||| ||| || | ||||||||| | | | |||||| Sbjct 144080827 GTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTGTT 144080768 Query 14048 CGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 | ||||| | || |||| | | || || || | | | ||| |||||||| | Sbjct 144080767 CCCAATCCA-ACACAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATCGTTTCAATGG 144080710 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || | || | | ||||| | ||||| || ||| || ||||| |||||||| | || Sbjct 144080709 CACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGATTA 144080653 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 | |||||||| || |||||||| ||||| || || || ||||| ||||| | ||| Sbjct 144080652 TTTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 144080593 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | | ||||| |||| ||| |||| ||||||| | ||| ||||||| Sbjct 144080592 GTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144080533 Query 14286 GCTGCAAAAAATGCC--AATATG 14306 |||||||| || ||| |||||| Sbjct 144080532 GCTGCAAATAAAGCCAGAATATG 144080510 >seq106 Length=111504155 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 10258844 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 10258785 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 10258784 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGG 10258725 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 10258724 CTACAACACGTTCACC 10258709 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 10261008 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 10260950 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 10260949 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 10260890 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 10260889 CATAAAGTCAAATGGGTT 10260872 >seq1 Length=228573443 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14096 TGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 ||||||||| | || || | | ||||| | ||||| | | | ||||| || ||||| Sbjct 139565361 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 139565420 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 ||| | |||||||||||||| ||| |||||||||| || || || || |||| || || Sbjct 139565421 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 139565480 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 | ||||| | || ||||| | ||||| || |||| |||||||| ||||| Sbjct 139565481 GCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 139565540 Query 14276 ACCATCACTAGCTGCAAAAAATGCCA 14301 |||||||| |||||||| || |||| Sbjct 139565541 GCCATCACTTGCTGCAAAGAAAGCCA 139565566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479461457126600