Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1588 158 2e-33 seq1481 158 2e-33 >seq1588 Length=553333 Score = 158 bits (174), Expect = 2e-33 Identities = 495/755 (66%), Gaps = 19/755 (3%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || ||| || ||| ||||| || ||| | ||||| || ||||| |||| ||||| ||| Sbjct 229688 TTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGG 229747 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || ||| ||||| || |||||||||||| | | ||||| | | | | || Sbjct 229748 ACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCCGAAGCCCGAG 229807 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| || || ||| |||||||| | ||||| || || Sbjct 229808 ---GAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTA 229864 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || ||| || || ||||| ||| |||| | ||| |||| | || || Sbjct 229865 AATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAG-ATTACAGAAGCCCGCTGTTT 229923 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 229924 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 229983 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||||| ||| | ||| || ||||| || || || || ||| ||| Sbjct 229984 CACTTACATCAAAGATCC-CAAAGAAAAGGAATTTCTCTTCAATGCCATTGA-ACGATGC 230041 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||||| | |||| | | ||||| | ||| | || || | | Sbjct 230042 CTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGGCTACCT 230101 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || ||||| || ||||| |||||||||||||| ||| ||||| Sbjct 230102 ATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTG 230161 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | | || || ||||||||||| || |||| ||||| || || ||| || || Sbjct 230162 CATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAAC 230221 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| |||||||||| |||| | | || || | ||| | | Sbjct 230222 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTG-CTTGCT--TGATGTTCAAACACC 230278 Query 125596 TGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTG 125654 || || | | | ||| | || || || || | | || | | | |||| || Sbjct 230279 TG-GTACACA------AACCATCGGAGGAGAAAGTGAGAGAAATAATTATCAATGCTGTT 230331 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 |||||||||||| || || ||||| || | || || | | ||||| ||||| ||| Sbjct 230332 CAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC 230391 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 | |||||| | ||||| |||||||||||||| Sbjct 230392 ACTCTAATGAAGCAATACATTGAGTTTGTGGCAGA 230426 >seq1481 Length=155549662 Score = 158 bits (174), Expect = 2e-33 Identities = 495/755 (66%), Gaps = 19/755 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || ||| || ||| ||||| || ||| | ||||| || ||||| |||| ||||| ||| Sbjct 44509245 TTCCCCGTCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGG 44509186 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || ||| ||||| || |||||||||||| | | ||||| | | | | || Sbjct 44509185 ACCACCGAGGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCCGAAGCCCGAG 44509126 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| || || ||| |||||||| | ||||| || || Sbjct 44509125 ---GAGAGATATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTA 44509069 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || ||| || || ||||| ||| |||| | ||| |||| | || || Sbjct 44509068 AATGAAAATTTGGTGGAGCGATTTAGCCAAATAGTTCAG-ATTACAGAAGCCCGCTGTTT 44509010 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 44509009 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 44508950 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||||| ||| | ||| || ||||| || || || || ||| ||| Sbjct 44508949 CACTTACATCAAAGATCC-CAAAGAAAAGGAATTTCTCTTCAATGCCATTGA-ACGATGC 44508892 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||||| | |||| | | ||||| | ||| | || || | | Sbjct 44508891 CTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGGCTACCT 44508832 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || ||||| || ||||| |||||||||||||| ||| ||||| Sbjct 44508831 ATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTG 44508772 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | | || || ||||||||||| || |||| ||||| || || ||| || || Sbjct 44508771 CATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAAC 44508712 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| |||||||||| |||| | | || || | ||| | | Sbjct 44508711 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTG-CTTGCT--TGATGTTCAAACACC 44508655 Query 125596 TGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGTG 125654 || || | | | ||| | || || || || | | || | | | |||| || Sbjct 44508654 TG-GTACACA------AACCATCGGAGGAGAAAGTGAGAGAAATAATTATCAATGCTGTT 44508602 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 |||||||||||| || || ||||| || | || || | | ||||| ||||| ||| Sbjct 44508601 CAGATAGAACAAGAATTCCTCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC 44508542 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGA 125749 | |||||| | ||||| |||||||||||||| Sbjct 44508541 ACTCTAATGAAGCAATACATTGAGTTTGTGGCAGA 44508507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740647458245240