Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1283 89.7 3e-13 >seq1283 Length=83181570 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| ||||| | || ||||||||||| |||||||| |||||||| | | || Sbjct 46388136 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATC 46388195 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | |||||| || | || || ||||| || || Sbjct 46388196 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 46388255 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | ||| ||||| ||| ||||| || |||| ||| | || || | Sbjct 46388256 CTGGATCTTGGCC---TTTACATTTTCTATCGTATCCAACGGTTCAACCTTGAGGGTGGT 46388312 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||| ||||| |||||||| ||||| || Sbjct 46388313 TGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46388351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318604911101202