Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1588 266 3e-66 seq1481 266 3e-66 seq1 111 1e-19 seq793 96.9 3e-15 seq106 82.4 7e-11 >seq1588 Length=553333 Score = 266 bits (294), Expect = 3e-66 Identities = 574/851 (67%), Gaps = 18/851 (2%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| |||| | ||||| ||||| || |||| | |||||||| ||| Sbjct 230544 TGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 230490 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 |||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 230489 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 230431 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | || Sbjct 230430 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 230371 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | || |||||| | ||| || | ||||| ||| || Sbjct 230370 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 230311 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| |||| | | || || || ||||||| || |||||||| Sbjct 230310 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 230251 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || |||||||| || || || || || ||||| || || || ||||| | Sbjct 230250 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 230191 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| ||||| ||||| || || ||||| || Sbjct 230190 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 230131 Query 13282 TGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| || || |||| |||| | ||||||||| ||| | ||| | | ||||| Sbjct 230130 TGCAGCGAAGGCTA-CAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACA 230072 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| || | || || || ||| ||| || || || || | | | | Sbjct 230071 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGCATTGAAGAGAAATT 230013 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 ||||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 230012 CCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 229953 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| Sbjct 229952 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 229893 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | || ||||| || ||||| || ||||| || ||||| ||| | | Sbjct 229892 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 229833 Query 13581 GTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAA 13636 | | || ||||| | | | || | ||| | | | ||| | ||| Sbjct 229832 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGA----TTCCCAGTGCCGAATG 229777 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 || || || | || |||||||| |||||| || ||||| | ||||||||||||||| Sbjct 229776 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 229717 Query 13697 ATCCATATATC 13707 ||| ||||| Sbjct 229716 TGCCAGATATC 229706 >seq1481 Length=155549662 Score = 266 bits (294), Expect = 3e-66 Identities = 574/851 (67%), Gaps = 18/851 (2%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| |||| | ||||| ||||| || |||| | |||||||| ||| Sbjct 44508389 TGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 44508443 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 |||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 44508444 GTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 44508502 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | || ||||| || || | || Sbjct 44508503 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 44508562 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | || |||||| | ||| || | ||||| ||| || Sbjct 44508563 CACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATTATTTC 44508622 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| |||| | | || || || ||||||| || |||||||| Sbjct 44508623 TCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44508682 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || |||||||| || || || || || ||||| || || || ||||| | Sbjct 44508683 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44508742 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| ||||| ||||| || || ||||| || Sbjct 44508743 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCTAC 44508802 Query 13282 TGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| || || |||| |||| | ||||||||| ||| | ||| | | ||||| Sbjct 44508803 TGCAGCGAAGGCTA-CAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCACA 44508861 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| || | || || || ||| ||| || || || || | | | | Sbjct 44508862 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCAT-CGTTCAATGGCATTGAAGAGAAATT 44508920 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 ||||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 44508921 CCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44508980 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| Sbjct 44508981 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44509040 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 | ||||| || | || ||||| || ||||| || ||||| || ||||| ||| | | Sbjct 44509041 GGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44509100 Query 13581 GTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAA 13636 | | || ||||| | | | || | ||| | | | ||| | ||| Sbjct 44509101 GAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGA----TTCCCAGTGCCGAATG 44509156 Query 13637 TCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATC 13696 || || || | || |||||||| |||||| || ||||| | ||||||||||||||| Sbjct 44509157 TCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44509216 Query 13697 ATCCATATATC 13707 ||| ||||| Sbjct 44509217 TGCCAGATATC 44509227 >seq1 Length=228573443 Score = 111 bits (122), Expect = 1e-19 Identities = 220/321 (69%), Gaps = 10/321 (3%) Strand=Plus/Plus Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTT 13321 ||||||| || |||| ||||| ||||| |||| |||| | ||||||||| ||| | | Sbjct 139565255 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTA-CAACACATTCACCATAGGTAGCCTCT 139565313 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT-TTTC 13380 || | | || || | |||||| ||||| || | | || || | | |||| Sbjct 139565314 TTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACA----AGGTGTTTC 139565366 Query 13381 TATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAA 13440 || | ||| || | | | | |||| || ||| || ||||| || || | | Sbjct 139565367 AATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAG 139565426 Query 13441 GCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGC 13500 ||||||||||| ||||| | |||||||| || |||||||| |||| ||||| | || Sbjct 139565427 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 139565486 Query 13501 CTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTC 13560 |||| | ||||||||| | ||||| || | |||||||| || ||||| || || Sbjct 139565487 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 139565546 Query 13561 ACTAGCAGCaaaaaaaGCAAG 13581 ||| || ||||| ||||| || Sbjct 139565547 ACTTGCTGCAAAGAAAGCCAG 139565567 >seq793 Length=147911612 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 104140656 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 104140715 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || ||||| | Sbjct 104140716 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 104140775 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 104140776 CCACCACTCTTTCCCC 104140791 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 104130026 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 104130085 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 104130086 ATAAAATCAAAAGGATTTT 104130104 >seq106 Length=111504155 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 10256458 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 10256400 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 10256399 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 10256361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430748927271498