Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1295 87.8 2e-12 seq1283 87.8 2e-12 >seq1295 Length=489134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| ||||||||| | ||||| || | ||| ||||||| || ||||| ||||| || | Sbjct 147062 AGGTTGTAAACATGTTAAAGGCATCCTGTTATATGGACCCCCAGGTTGTGGTAAGACTCT 147121 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGG 164618 |||||||| |||| |||| | || ||| | || || ||| | || ||||| Sbjct 147122 CTTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAGCCC--AAAGTGGTCAATGG 147178 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 || ||| | | ||||||||||| || || ||||| ||||| || | || | ||| Sbjct 147179 GCCAGAAATCCTTAACAAATATGTGGGAGAATCAGAGGCTAACATTCGCAAACTTTTTGC 147238 Query 164679 GGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 147239 TGATGCTGAAGAGGAGCAAAGGA 147261 >seq1283 Length=83181570 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| ||||||||| | ||||| || | ||| ||||||| || ||||| ||||| || | Sbjct 11046109 AGGTTGTAAACATGTTAAAGGCATCCTGTTATATGGACCCCCAGGTTGTGGTAAGACTCT 11046050 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGG 164618 |||||||| |||| |||| | || ||| | || || ||| | || ||||| Sbjct 11046049 CTTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAGCCC--AAAGTGGTCAATGG 11045993 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 || ||| | | ||||||||||| || || ||||| ||||| || | || | ||| Sbjct 11045992 GCCAGAAATCCTTAACAAATATGTGGGAGAATCAGAGGCTAACATTCGCAAACTTTTTGC 11045933 Query 164679 GGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 11045932 TGATGCTGAAGAGGAGCAAAGGA 11045910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595540926068400