Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1588 212 7e-50 seq1481 212 7e-50 seq106 109 6e-19 seq793 98.7 1e-15 seq1 95.1 1e-14 >seq1588 Length=553333 Score = 212 bits (234), Expect = 7e-50 Identities = 537/813 (66%), Gaps = 22/813 (3%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||| ||| | ||| ||| |||| | |||||| | |||| Sbjct 230610 TTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCC 230551 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | |||| | || || || || ||||||| | ||| ||| Sbjct 230550 ATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 230496 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 ||| |||| |||||||| | || | || | || || |||||||||| | Sbjct 230495 TTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 230437 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 230436 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 230377 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || || |||||| || || | | ||| Sbjct 230376 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 230317 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | | | |||| |||| | | ||| | ||||| |||||||| Sbjct 230316 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTG----TACCAGG--TGTTTGAACATCAA 230263 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | |||||| ||||| || | Sbjct 230262 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 230203 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 230202 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAA 230143 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || ||||| || || || | |||||||| || |||| ||||| ||| Sbjct 230142 GATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCC 230083 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 230082 AATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATT 230024 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | ||||| | ||| | ||| ||||||||| Sbjct 230023 GAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 229964 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 229963 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 229904 Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| | | | |||||| | |||| |||||||||||||| |||||||| || | Sbjct 229903 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 229845 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||| | || ||||||||||| Sbjct 229844 CAAAGAAAACCAGAACATGGGATATAAAATATC 229812 >seq1481 Length=155549662 Score = 212 bits (234), Expect = 7e-50 Identities = 537/813 (66%), Gaps = 22/813 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||| ||| | ||| ||| |||| | |||||| | |||| Sbjct 44508323 TTCATTTAGAAGTCAGCATTTAAGGTAAAAGAATTCTCTTTTGGACTTGACACCACTCCC 44508382 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | |||| | || || || || ||||||| | ||| ||| Sbjct 44508383 ATCCTCTGATACTCGCCTACTCCCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44508437 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 ||| |||| |||||||| | || | || | || || |||||||||| | Sbjct 44508438 TTCTCCGTAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44508496 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| |||||||| || || Sbjct 44508497 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAAT 44508556 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || || |||||| || || | | ||| Sbjct 44508557 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAAT 44508616 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | | | |||| |||| | | ||| | ||||| |||||||| Sbjct 44508617 TATTTCTCTCACTTTCTCCTCCGATGGTTTGTG----TACCAGG--TGTTTGAACATCAA 44508670 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | |||||| ||||| || | Sbjct 44508671 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44508730 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 44508731 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAA 44508790 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || ||||| || || || | |||||||| || |||| ||||| ||| Sbjct 44508791 GATGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCC 44508850 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 44508851 AATCCAGCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT-TCAATGGCATT 44508909 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | ||||| | ||| | ||| ||||||||| Sbjct 44508910 GAAGAGAAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACAT 44508969 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 44508970 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAT 44509029 Query 21835 TTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| | | | |||||| | |||| |||||||||||||| |||||||| || | Sbjct 44509030 CTGAACTATTTGGCT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTG 44509088 Query 21894 CAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||| | || ||||||||||| Sbjct 44509089 CAAAGAAAACCAGAACATGGGATATAAAATATC 44509121 >seq106 Length=111504155 Score = 109 bits (120), Expect = 6e-19 Identities = 110/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | || ||||| | ||||| || || Sbjct 10258842 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 10258783 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| |||||||| | || |||||||||||||| || || |||||||| || Sbjct 10258782 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCT 10258723 Query 21620 ACTAATCGTTCACCGTATGTAG 21641 || | |||||||| ||| ||| Sbjct 10258722 ACAACACGTTCACC-TATTTAG 10258702 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 10261014 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 10260955 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 10260954 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 10260895 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 10260894 TTCTCCATAAAGTCAAATGGGTTCTC 10260869 >seq793 Length=147911612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| || |||| Sbjct 104129937 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTAT 104129996 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 104129997 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAAT 104130056 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 104130057 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 104130105 >seq1 Length=228573443 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||| | ||||| || || || || || | || ||||| | || Sbjct 139565427 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGC 139565486 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || |||||| | ||||||||||||||||||| ||||| Sbjct 139565487 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 139565546 Query 21886 ACTGGCGGCAAAAAATGCCA 21905 ||| || ||||| || |||| Sbjct 139565547 ACTTGCTGCAAAGAAAGCCA 139565566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531605269266760