Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1056 89.7 5e-13 >seq1056 Length=137163284 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || ||| | ||||| || | |||||| | || | || | | Sbjct 128407150 ATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 128407091 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | |||||| |||||| ||||| ||||| || ||||| || || Sbjct 128407090 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 128407031 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| | | | | ||||| ||| Sbjct 128407030 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 128406971 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| ||||| | || ||||| || | || ||||| || Sbjct 128406970 ATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 128406924 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| |||| | || | | Sbjct 128407378 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGT 128407319 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| |||||| || || ||||| || ||||| ||||| Sbjct 128407318 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCTGATCAG 128407259 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| ||||| || ||||||| | | | | | ||||| ||| Sbjct 128407258 CAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 128407199 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | || ||||| || | || ||||| || Sbjct 128407198 ATCCAGAAAGAGTCCACCTTGCACCTGGTGCTCCGTCTCAGAGGTGG 128407152 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||| | ||||| ||| | |||||| | || | || | | Sbjct 128408060 ATGCAGATCTTCGTGAAGACACTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 128408001 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | |||||| |||||| ||||| ||||| || ||||| || || Sbjct 128408000 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 128407941 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | || || || || ||||||| | | | | ||||| ||| Sbjct 128407940 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 128407881 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| ||||| | || ||||| || | || ||||| || Sbjct 128407880 ATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 128407834 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 26752 CTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 |||||| || | |||| |||| | || || || || | ||||| || | |||||| Sbjct 128408303 CTTTTTTGTTAGACAA--TGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCC 128408246 Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 |||| | || | | |||||||||||| | ||||| |||||| || || |||| Sbjct 128408245 TCGAGGTTGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAG 128408186 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || ||||| || || || || || || | | || ||||| || ||||||| | | Sbjct 128408185 GCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCA 128408126 Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAG 26991 | | ||||| ||||| || ||||| || || | || ||||| || | || |||| Sbjct 128408125 CCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAG 128408066 Query 26992 GAGG 26995 | || Sbjct 128408065 GTGG 128408062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478396449187280