Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1588 105 2e-17 seq1481 105 2e-17 seq1024 100 7e-16 seq106 95.1 3e-14 >seq1588 Length=553333 Score = 105 bits (116), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 230050 AAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAA 230109 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || || |||| || |||||||| ||||||||||| | ||| | || Sbjct 230110 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 230169 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | ||||| || || |||||||| ||||| | |||||| Sbjct 230170 TTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGC 230229 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| | || |||||||| || Sbjct 230230 AGAGATGAGGGTTTACACTGTGATTTTGCTTG 230261 >seq1481 Length=155549662 Score = 105 bits (116), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 44508883 AAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAA 44508824 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| || | || || |||| || |||||||| ||||||||||| | ||| | || Sbjct 44508823 CGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATA 44508764 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | ||||| || || |||||||| ||||| | |||||| Sbjct 44508763 TTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGC 44508704 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| | || |||||||| || Sbjct 44508703 AGAGATGAGGGTTTACACTGTGATTTTGCTTG 44508672 >seq1024 Length=135753878 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| || ||||| || || |||||| Sbjct 4037601 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACGGAAACAGGCACCCCGTATATG 4037660 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 4037661 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 4037720 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 4037721 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 4037753 >seq106 Length=111504155 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-C 22547 |||||| || | || ||||||| || ||||||||||||||||| || | ||||| | | Sbjct 10258712 GAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCCGGTTC-TTTTGCGTC 10258770 Query 22548 AATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAAT 22607 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | || Sbjct 10258771 GATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTAT 10258830 Query 22608 TAGCCGAGATGAGG 22621 |||| ||||||||| Sbjct 10258831 TAGCAGAGATGAGG 10258844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302611336459118