Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1056 107 2e-18 >seq1056 Length=137163284 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||| | ||||| || | || ||| | || |||||| ||| Sbjct 128407150 ATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 128407091 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| |||||| ||||| |||||||| ||||| || || Sbjct 128407090 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 128407031 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 128407030 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 128406971 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| ||||| Sbjct 128406970 ATCCAGAAAGAGTCTAC 128406954 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | ||||| || | || ||| | || |||||| ||| Sbjct 128406466 ATGCAAATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 128406407 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| |||||| ||||| |||||||| ||||| || || Sbjct 128406406 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 128406347 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | || ||||| || ||||||| Sbjct 128406346 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATG 128406310 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | ||||| ||| | || ||| | || |||||| ||| Sbjct 128408060 ATGCAGATCTTCGTGAAGACACTCACTGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 128408001 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| |||||| ||||| |||||||| ||||| || || Sbjct 128408000 GACACCATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 128407941 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || ||||| || ||||||| | | | | || || ||| Sbjct 128407940 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 128407881 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| ||||| Sbjct 128407880 ATCCAGAAAGAGTCTAC 128407864 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| || ||| ||| Sbjct 128407378 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGT 128407319 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| || || |||||||| ||||| ||||| Sbjct 128407318 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCTGATCAG 128407259 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||| || || || ||||||| Sbjct 128407258 CAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATG 128407222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| |||| || ||| ||| Sbjct 128408289 AATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAG 128408230 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| || || |||||||| ||||| || || Sbjct 128408229 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 128408170 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | || || || || ||||||| Sbjct 128408169 GCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATG 128408132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429703094129595