Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1395 87.8 2e-12 seq1283 86.0 5e-12 seq301 82.4 6e-11 >seq1395 Length=66533130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/218 (68%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 115284 AAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCA 115343 ||||||| ||||| || ||||| || || || | |||||| ||| || | || || Sbjct 38578102 AAATGCAGATTTTCGTGAAAACCCTTACAGGGAGAACCATCACCCTCAAGGTTGAACCCT 38578161 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||| || | ||| | ||||| || || ||||| ||||| | || ||||| Sbjct 38578162 CCGATACGATAGGAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATC 38578221 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||||| || | ||| ||||| ||| | ||||||| | || || | Sbjct 38578222 GGCAAAGACTAATATTTGCTGGCAAGCAACTGGAAGATGTCT-----------GACTACA 38578270 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||||||||| ||||||||| | ||| | ||||||||| Sbjct 38578271 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 38578308 >seq1283 Length=83181570 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| || || || ||||| || || || || | ||| ||| | ||| |||| || Sbjct 34932665 AAAATGCAGATCTTCGTGAAAACCCTTACCGGCAAGATCATCACCCTTGAAGTGGAGCCC 34932606 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGC-GTCCCCGTTGA 115401 || | |||| | | | | || || ||||| |||||||||||| |||||| ||| Sbjct 34932605 AGTGCCACTATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCAATCCCCG-TGA 34932547 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||| || || || | ||| ||||| || | ||||||| | | | | || || Sbjct 34932546 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCAGTCTTTCTGACTA 34932487 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || |||||||| || | ||| |||| || | || |||| || Sbjct 34932486 CAACATCCAGAAAGAGTCGACCCTGCATCTGGTCCTGCGTCTGAGAGGTGG 34932436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || || | ||| || | || | Sbjct 46388351 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACAACCACCCTCAAGGTTGAACCG 46388292 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 46388291 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 46388232 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||||||| || | ||| ||||| ||| | ||||||| || || | | || Sbjct 46388231 CAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGGCTAC 46388172 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||||||||||||| | ||| | ||||||||| |||| || || Sbjct 46388171 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTTGAGACTGCGTGGTGG 46388122 >seq301 Length=175400573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || | || || ||||| ||| | || | || || Sbjct 117182941 AAAATGCAGATTTTCGTGAAAACCCTTATGGAGAAGACCATCACCCTTGAGGCTGAACCC 117183000 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 117183001 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 117183060 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| || || ||| | ||||||| || || | || || Sbjct 117183061 CAGCAAAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 117183120 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 | |||||||| ||||||||| | ||| | |||||||| Sbjct 117183121 AGTATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 117183158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425113581717880