Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1283 109 4e-19 seq1056 95.1 1e-14 seq401 82.4 6e-11 >seq1283 Length=83181570 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| |||||| || |||||||| || ||||||||||| | Sbjct 38692117 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 38692058 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 38692057 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 38691998 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | ||||||| Sbjct 38691997 ATGCCTTCCTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 38691940 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||||||||| || ||||| || ||||| || || |||||||||||| Sbjct 38691939 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 38691887 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 38692345 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 38692286 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 38692285 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 38692226 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 38692225 ATGCCTTCTTTATCCTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 38692168 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || ||||| || || || || |||||||| Sbjct 38692167 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 38692119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| |||||| || ||||| || || ||||||||||| | Sbjct 34932436 CCACCTCTCAGACGCAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 34932495 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | | | | || |||| || ||||| ||| | || |||| ||| ||||| || || Sbjct 34932496 AGACTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC-ACGGGG 34932554 Query 16829 AC-GCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| ||||| || |||| ||| || | | | |||| | | ||||||| Sbjct 34932555 ATTGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCAC 34932614 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||| | ||||||| | || ||||| || ||||| || || |||||||||||| Sbjct 34932615 TTCAAGGGTGATGATCTTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTTG 34932666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 38692559 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 38692500 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || Sbjct 38692499 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATC 38692440 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||||| |||| |||||| Sbjct 38692439 TTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATG 38692382 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || || || |||||||| Sbjct 38692381 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 38692347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || |||||||| || ||||||||||| | Sbjct 34932209 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 34932268 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| || ||||| ||| | || |||| ||| | | || Sbjct 34932269 AGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCCGAT-GGGGGGG 34932327 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | | ||||| | ||||||| Sbjct 34932328 ATGCCTTCTTTATCTTGGATCTTGGC--CTTCACATTTTCGATGGTGTCACTGGGCTCCA 34932385 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || |||||||| || || || || |||||||| Sbjct 34932386 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 34932434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || |||||||| || ||| ||||||| | | || | | || Sbjct 34931994 CAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGCTGTAGTCAGAAAGAGTGCGGCCATC 34932053 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC-CACAGGCACGCCCTCTTTGT 16841 ||||| | ||||| ||| | || |||| ||| || || | || | ||| |||| | Sbjct 34932054 TTCCAACTTCTTGCCTGCAAAGATGAGCCTCTGCTGATCGCGGGGGGATGCCTTCTTCAT 34932113 Query 16842 C--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 | || || ||| ||||| | | | ||||| | ||||||| |||| |||||| Sbjct 34932114 CCTGGATCTTGGCT--TTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 34932171 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||||||||| || || || || |||| ||| Sbjct 34932172 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTTCAT 34932207 >seq1056 Length=137163284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| || ||||| || || ||||||||||| | Sbjct 128406695 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 128406754 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || | || ||| ||||| ||| Sbjct 128406755 CAGGGTACGACCATCTTCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 128406814 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || ||||| ||| || | | | ||||| | ||||||| Sbjct 128406815 GATGCCCTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCC 128406872 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 128406873 ACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 128406922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| |||||||| || || ||||||||||| | Sbjct 128408061 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 128408120 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || |||| ||| ||||| ||| Sbjct 128408121 CAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 128408180 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || ||||| ||| || | | | ||||| | |||||| Sbjct 128408181 GATGCCTTCCTTATCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCA 128408238 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||| || || ||||| || || || || ||||||||| Sbjct 128408239 ACCTCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCATT 128408289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| |||| |||||||| || || ||||||||||| | Sbjct 128406467 CCCACCTCTGAGACGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 128406526 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| ||||| || ||| | || | || ||| ||||| ||| Sbjct 128406527 CAGGGTACGACCATCTTCCAGCTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 128406586 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || ||||| ||| || | | | ||||| | ||||||| Sbjct 128406587 GATGCCTTCCTTGTCTTGGATCTTTGC--CTTGACATTCTCGATGGTGTCACTGGGCTCC 128406644 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 128406645 ACCTCGAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 128406694 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | || ||| ||||| Sbjct 128405804 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT----GCGTC 128405859 Query 16783 C----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 | |||| ||||| || ||| | || | || ||| ||||| ||| | ||| || | Sbjct 128405860 CATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCT 128405919 Query 16839 TGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| || ||||| ||| || | | | ||||| | |||||| || | || Sbjct 128405920 TGTCTTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTCGGCTCCACCTCGAGAGT 128405977 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| || || ||||| || || || || |||||||| Sbjct 128405978 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 128406016 >seq401 Length=166211670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| ||||||| || || |||||| |||| | || | | ||||||| ||| Sbjct 24856471 TGCAGGATGGACTCTTTCTGGATGTTGCAGTCTAAGAGAGTGCGGCCATCCTCCAGCTGT 24856530 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||||||| | || || || || ||||| | || | |||||| ||||| ||||| Sbjct 24856531 TTGCCCGCAAATATCAGACGTTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTG 24856590 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | ||||| | |||||| || | ||||||||| || || || Sbjct 24856591 GCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTG 24856650 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| |||||||| Sbjct 24856651 AGGGTCTTCACAAAGATCTGCAT 24856673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404868554842510