Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1588 259 5e-64 seq1481 259 5e-64 seq1 152 6e-32 seq106 98.7 1e-15 >seq1588 Length=553333 Score = 259 bits (286), Expect = 5e-64 Identities = 536/790 (68%), Gaps = 6/790 (1%) Strand=Plus/Minus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 230435 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 230376 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| | ||| |||| || || ||| || | | | Sbjct 230375 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 230316 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| ||| Sbjct 230315 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 230256 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| || || | || || Sbjct 230255 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 230197 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | ||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 230196 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 230137 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || || || || || |||| |||||| || | | || || | ||||| Sbjct 230136 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 230077 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||| | || || || || || Sbjct 230076 GCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 230018 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || || | | |||| ||||| || || || | ||| |||||||||||| Sbjct 230017 AAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 229958 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 229957 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 229898 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | ||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| || Sbjct 229897 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 229838 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 | ||| | ||| |||||||| | |||| || || | ||||| | | || | Sbjct 229837 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGA-A 229779 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || || || || || || ||| ||||| || || || || || || || |||| Sbjct 229778 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 229719 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || || || || | | || || |||||||| || |||||| || | | Sbjct 229718 TCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAAGCGGCAAGGGTTTCCTCTCA 229659 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 229658 GCAGCGGCTC 229649 >seq1481 Length=155549662 Score = 259 bits (286), Expect = 5e-64 Identities = 536/790 (68%), Gaps = 6/790 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 44508498 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 44508557 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| | ||| |||| || || ||| || | | | Sbjct 44508558 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCTTGTTCTATCTGAACAGCATTGATAATT 44508617 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||| | | | |||||| ||||| | | ||| |||| ||||| ||| Sbjct 44508618 ATTTCTCTCACTTTCTCCTCCGATGGTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44508677 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| || || | || || Sbjct 44508678 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44508736 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | ||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 44508737 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 44508796 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || || || || || |||| |||||| || | | || || | ||||| Sbjct 44508797 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44508856 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||| | || || || || || Sbjct 44508857 GCACAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT-CAATGGCATTGAAGAG 44508915 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || || | | |||| ||||| || || || | ||| |||||||||||| Sbjct 44508916 AAATTCCTTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44508975 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 44508976 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44509035 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | ||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| || Sbjct 44509036 TATTTGGCTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44509095 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 | ||| | ||| |||||||| | |||| || || | ||||| | | || | Sbjct 44509096 AACCAGAACATGGGATATAAAATATCTCTCCTCGGGCTTCGGGGATTCCCAGTGCCGA-A 44509154 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || || || || || || ||| ||||| || || || || || || || |||| Sbjct 44509155 TGTCCTTGGACAGGTCCACCTCCTCGGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44509214 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || || || || | | || || |||||||| || |||||| || | | Sbjct 44509215 TCTGCCAGATATCATGGTACTCGACGGGGAAGATGACAAAGCGGCAAGGGTTTCCTCTCA 44509274 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 44509275 GCAGCGGCTC 44509284 Score = 138 bits (152), Expect = 1e-27 Identities = 375/567 (66%), Gaps = 9/567 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 144080948 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 144080890 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| | |||||| ||||||||| | Sbjct 144080889 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGA 144080830 Query 93210 aTATACCTTCCACGGCTGCAAATGC--CA--CAATACGTTCGGCAAAATTTGCGGAATTA 93265 | | | |||||| ||||| || || ||| |||||| || | || || Sbjct 144080829 AGGTGCTTTCCACCAAGGCAAAGGCTGCATGCAACACGTTCTCCATGGGTAACGTCTTTG 144080770 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | | ||||| || ||||| | || || ||||| | ||| || | ||||| || Sbjct 144080769 TTCCCAATCCAACACAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATCGTTTCAATG 144080711 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | || || | || | || | |||| || |||| || || | ||| | Sbjct 144080710 GCACTGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTA 144080653 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 | ||||||||||| | || || || ||||||||||| || ||||| || | ||| Sbjct 144080652 TTTATTTCAGAATGCATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCT 144080593 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || ||| | ||||||||| |||| || || | ||||||| | ||| ||||| || Sbjct 144080592 GTAATCCGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATCCCATCACAT 144080533 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 |||||||| ||||||| ||||| |||||||| | | | ||| || || ||| Sbjct 144080532 GCTGCAAATAAAGCCAGAATATGGGATATAAAATATCTTTACTCAGGCTTCAGGGCTTCC 144080473 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || | | | || || || || || || || | | | |||| || || | ||| || Sbjct 144080472 CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAAACCTCTACT 144080413 Query 93626 TTTTTGTACATATCCCATATGTCTTGA 93652 || || ||||| | ||| || || ||| Sbjct 144080412 TTCTTTTACATTTTCCAAATATCATGA 144080386 >seq1 Length=228573443 Score = 152 bits (168), Expect = 6e-32 Identities = 236/336 (70%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 ||||||| ||| ||||||| || ||||| || |||| || ||| || | | || | Sbjct 139565255 AAAAAAAGATATCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCTCTT 139565314 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 | | || || | || ||||||| || || ||| | ||||||| ||||| | Sbjct 139565315 TGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGGT---GTTTCAA 139565368 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 | | ||| || || | || | || | |||||| |||||| || || || | ||| Sbjct 139565369 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 139565428 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||||||||||||||| || ||||| ||||||||||| | |||||||| | |||| Sbjct 139565429 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTT 139565488 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || ||||| |||||||| ||||| ||| || | |||||||| ||||| ||||| Sbjct 139565489 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCAC 139565548 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 ||||||||| ||||||| | | | |||||||| Sbjct 139565549 TTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 139565584 >seq106 Length=111504155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| ||| Sbjct 10258815 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCG 10258756 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 10258755 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 10258712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 10256465 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 10256406 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 10256405 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 10256346 Query 93475 TAC 93477 || Sbjct 10256345 CAC 10256343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556551401178760