Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1197 96.9 2e-15 seq1580 82.4 5e-11 seq1481 82.4 5e-11 >seq1197 Length=81586097 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 51799406 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 51799347 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 51799346 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 51799287 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || |||||||| |||||||||||||| || || |||||| | ||| || | || || Sbjct 51799286 TCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTA 51799227 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 51799226 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 51799191 >seq1580 Length=220409 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||| |||| || || | ||||| ||| ||| || ||||| ||| | || ||| | Sbjct 148404 CAAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGTTGAACC 148345 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| || | | || | ||| || || ||||| ||||| | ||| | Sbjct 148344 CTCAGATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCTGA 148285 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || | Sbjct 148284 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTG 148225 Query 22010 CAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| ||||| ||||| ||||||||||| Sbjct 148224 CAACATTCAAAAGGAGCCTACTCTTCAT 148197 >seq1481 Length=155549662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 |||| |||| || || | ||||| ||| ||| || ||||| ||| | || ||| | Sbjct 3585959 CAAACTGCAGATTTTCGTGAAAACCCTAAGGGGGAAGACCATCACCCTTGAGGTTGAACC 3586018 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | |||| || | | || | ||| || || ||||| ||||| | ||| | Sbjct 3586019 CTCAGATGCGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCTGA 3586078 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || | Sbjct 3586079 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTG 3586138 Query 22010 CAATATTCAGAAGGAATCTACTCTTCAT 22037 ||| ||||| ||||| ||||||||||| Sbjct 3586139 CAACATTCAAAAGGAGCCTACTCTTCAT 3586166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357930795849946