Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1588 165 2e-35 seq1481 165 2e-35 >seq1588 Length=553333 Score = 165 bits (182), Expect = 2e-35 Identities = 418/625 (67%), Gaps = 32/625 (5%) Strand=Plus/Plus Query 42286 TCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCG 42345 ||||| |||| || |||||| ||||| ||||||||| || ||| ||||||| ||| Sbjct 229695 TCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCG 229754 Query 42346 AGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACGA 42400 ||||| | |||||| ||||||||| |||| |||||| || | | | ||| | || Sbjct 229755 AGGAGGTGGACCTGTCCAAGGACATTCGGCA--CTGGGAATCCCCGAAGCCCGAGGA-GA 229811 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | |||| || | | |||| ||||| || || ||| |||||||| ||||| Sbjct 229812 GATATTTTATATCCCATG--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGA 229869 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTAC 42518 || ||| | || | || || ||| ||| || || ||||| ||||| Sbjct 229870 AAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTAT 229927 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---AC 42575 |||||||| || ||||| || ||| | || ||||| |||| | || || | || Sbjct 229928 GGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGAC 229984 Query 42576 ACGTACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGAT 42631 || |||||| |||||| || || || || ||||| ||||| || ||||| Sbjct 229985 ACTTACATCAAAGATCCCAAAGA----AAAGGAATTTCTCTTCAATGCCATTGA-ACGAT 230039 Query 42632 GCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAAC 42691 ||| || ||||||||||||| || ||||| | |||||| | | || || || Sbjct 230040 GCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGGCTAC 230099 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 | || || | | |||||||| | || || || ||||||||||| || || | || Sbjct 230100 CTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTT 230159 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || || || |||||||||||| | | ||||||| || ||||| || || || || Sbjct 230160 TGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGA 230219 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| || ||||| || ||||| | || | || ||||| ||| | ||||| | || Sbjct 230220 ACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTC---AAACA 230276 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAG 42896 ||| ||||| || ||| ||||| Sbjct 230277 CCTGGTACACAAACCATCGGAGGAG 230301 >seq1481 Length=155549662 Score = 165 bits (182), Expect = 2e-35 Identities = 418/625 (67%), Gaps = 32/625 (5%) Strand=Plus/Minus Query 42286 TCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCG 42345 ||||| |||| || |||||| ||||| ||||||||| || ||| ||||||| ||| Sbjct 44509238 TCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACCG 44509179 Query 42346 AGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACGA 42400 ||||| | |||||| ||||||||| |||| |||||| || | | | ||| | || Sbjct 44509178 AGGAGGTGGACCTGTCCAAGGACATTCGGCA--CTGGGAATCCCCGAAGCCCGAGGA-GA 44509122 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | |||| || | | |||| ||||| || || ||| |||||||| ||||| Sbjct 44509121 GATATTTTATATCCCATG--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGA 44509064 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTAC 42518 || ||| | || | || || ||| ||| || || ||||| ||||| Sbjct 44509063 AAATTTGGTGGAGCGATTTAGCCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTAT 44509006 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---AC 42575 |||||||| || ||||| || ||| | || ||||| |||| | || || | || Sbjct 44509005 GGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGAC 44508949 Query 42576 ACGTACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGAT 42631 || |||||| |||||| || || || || ||||| ||||| || ||||| Sbjct 44508948 ACTTACATCAAAGATCCCAAAGA----AAAGGAATTTCTCTTCAATGCCATTGA-ACGAT 44508894 Query 42632 GCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAAC 42691 ||| || ||||||||||||| || ||||| | |||||| | | || || || Sbjct 44508893 GCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGTGCTGGATTGGGGACAAAGAGGCTAC 44508834 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 | || || | | |||||||| | || || || ||||||||||| || || | || Sbjct 44508833 CTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCATCTTCTTTTCTGGTTCTTT 44508774 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || || || |||||||||||| | | ||||||| || ||||| || || || || Sbjct 44508773 TGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGA 44508714 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| || ||||| || ||||| | || | || ||||| ||| | ||||| | || Sbjct 44508713 ACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTC---AAACA 44508657 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAG 42896 ||| ||||| || ||| ||||| Sbjct 44508656 CCTGGTACACAAACCATCGGAGGAG 44508632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943814513336240