Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1332 102 7e-17 >seq1332 Length=78221452 Score = 102 bits (112), Expect = 7e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| |||||||| ||||| ||||| || || | ||| Sbjct 17408376 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCGAGGCCC 17408435 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||| ||||| |||||||| ||||| ||||||| || | ||||| || || Sbjct 17408436 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 17408495 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || |||||||||| Sbjct 17408496 CAGAGGGCATGGCATGGAGGCAGCGCCATCA 17408526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441127567755160