Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1283 143 3e-29 seq1197 123 2e-23 seq1 113 5e-20 seq148 105 7e-18 seq1580 89.7 5e-13 seq1481 89.7 5e-13 seq401 86.0 6e-12 seq301 84.2 2e-11 >seq1283 Length=83181570 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 38692543 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 38692484 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||||||||| || |||||||| ||||| || || ||| Sbjct 38692483 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 38692424 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | ||| | |||||||||||||| || Sbjct 38692423 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 38692364 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 38692363 TTCACGAAGATCTGCAT 38692347 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| ||||| || |||||||| || | | |||| | ||| Sbjct 34932451 AGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGACTGCGGCCATCT 34932510 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| | ||| | |||||||| ||| Sbjct 34932511 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCACGGGGATTGCCTTCTTTATCT 34932570 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | || ||| || |||||||| | || | | || Sbjct 34932571 TGGATTTTGGCCTTGACATTTTCGATAGTGGCACTGGGCTCCACTTCAAGGGTGATGATC 34932630 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | ||||| ||||| || |||||||| Sbjct 34932631 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 34932665 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || || || |||||||| || | | || || | ||| Sbjct 38692102 AGGACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCT 38692043 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||||||||| || ||||| || || Sbjct 38692042 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCC 38691983 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || ||||| || | || | |||| Sbjct 38691982 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 38691923 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | ||||| ||||| || |||||||| Sbjct 38691922 TTGCCGGTAAGGGTTTTCACGAAGATCTGCATTTT 38691888 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 38692315 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 38692256 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||||||||| || |||||||| || || || || ||| Sbjct 38692255 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 38692196 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||||||| | || | ||||||||| |||| || Sbjct 38692195 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 38692136 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 38692135 TTCACGAAGATCTGCAT 38692119 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | || | | ||||| ||||||||||| Sbjct 34932239 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACCGCCATCTTCCAGCTGCTTGCCT 34932298 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||| | | ||| ||| | |||||||| ||||| || || ||| Sbjct 34932299 GCAAAGATGAGCCTCTGCCGATGGGGGGGA-TGCCTTCTTTATCTTGGATCTTGGCCTTC 34932357 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || |||||||| | || | |||||||||||||| || Sbjct 34932358 ACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 34932417 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 34932418 TTCACGAAGATCTGCAT 34932434 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| ||| | ||| | ||||| || || ||||||||||| ||||| | | Sbjct 46388121 ACCACCACGCAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGA 46388180 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || |||||||| ||| | || | | ||||| || ||||| Sbjct 46388181 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGG 46388240 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 ||||||||| || || || || || ||||||| || | |||| || ||| || | Sbjct 46388241 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAACGG-TTCAA 46388299 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | | || ||||| || || | ||||| |||||||| |||||||| Sbjct 46388300 CCTTGAGGGTGGTTGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 46388351 >seq1197 Length=81586097 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 51799175 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 51799234 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||||||||| ||| | || || | |||||| || ||||| Sbjct 51799235 CAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 51799294 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || || Sbjct 51799295 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 51799354 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| |||||||| |||||||| Sbjct 51799355 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 51799405 >seq1 Length=228573443 Score = 113 bits (124), Expect = 5e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | |||| | ||||| |||||| |||| Sbjct 196892017 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCTAGCTGCATGCCT 196892076 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| | || ||||| || || || || || ||| Sbjct 196892077 GCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTC 196892136 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||||||||| |||| || Sbjct 196892137 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 196892196 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 196892197 TTCACGAAGATCTGCATTTT 196892216 >seq148 Length=133216015 Score = 105 bits (116), Expect = 7e-18 Identities = 147/208 (71%), Gaps = 11/208 (5%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 25986786 GTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 25986845 Query 64307 GCATAAATGAGCCGCTGCTGGTCG-----------GGAGGAATTCCTTCTTTTTCTTGTA 64355 ||| | ||||||| |||||||||| || || | |||||||| || || | Sbjct 25986846 GCAAAGATGAGCCTCTGCTGGTCGGGGCTGGGGGTGGGGGGGTGCCTTCTTTATCCTGGA 25986905 Query 64356 TTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGC 64415 | || ||| ||| |||| || |||| || |||||||| | || | |||||||| Sbjct 25986906 TCTTGGCCTTCACATTTTCCATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGC 25986965 Query 64416 CGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||| || || ||||| || ||||| Sbjct 25986966 CAGTCAGGGTCTTCACGAAGATCTGCAT 25986993 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| ||||||||||| || || |||| | ||||| | ||||||||| || Sbjct 38646821 GACTCTTTCTGAATGTTGTAGTCACAAACAGTGCAGCCATCTTCTAACTGCTTGCCTACA 38646880 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | ||||| | |||||||| || || || || ||||| | || || || ||| ||| Sbjct 38646881 AAGATGAGACTGTGCTGGTCAGGGGGGATGCCCTCTTTAACATGGATCTTGGCCTTCACA 38646940 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 | | | |||| | ||||| || | || | |||||||||||||| ||||| Sbjct 38646941 TTTTGGAGGATGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTC 38647000 Query 64430 ACGAAAATTTGCATTTT 64446 | ||| ||||||||||| Sbjct 38647001 AGGAAGATTTGCATTTT 38647017 >seq1580 Length=220409 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| |||| ||||||| || | || |||||||||||| | || | | || || | Sbjct 148185 TCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCC 148244 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| || ||||||||||| || || Sbjct 148245 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTT 148304 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | | ||| || || || || | || | Sbjct 148305 ATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGAT 148364 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | | ||||| |||||||| |||| ||| Sbjct 148365 GGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 148403 >seq1481 Length=155549662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| |||| ||||||| || | || |||||||||||| | || | | || || | Sbjct 3586178 TCTCAGCAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCC 3586119 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| || ||||||||||| || || Sbjct 3586118 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCCTCCTT 3586059 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | | ||| || || || || | || | Sbjct 3586058 ATCCTGGATCTTGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAACCTCAAGGGTGAT 3585999 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | | ||||| |||||||| |||| ||| Sbjct 3585998 GGTCTTCCCCCTTAGGGTTTTCACGAAAATCTGCAGTTT 3585960 >seq401 Length=166211670 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || |||||||||||||| || | Sbjct 161377047 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAAGCTCCTTTTGAATGTTGTAGTCAG- 161376989 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || | | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 161376988 -ACAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 161376930 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | |||| || || || Sbjct 161376929 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGGTTCAAC 161376870 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | || | |||||| || | | ||||||| | |||| |||||||| Sbjct 161376869 CTTGAGGGTGATGGTCTT-CCCCTAAGGGTTTTTATGGAAATCTGCATTTT 161376820 >seq301 Length=175400573 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || | ||| ||||||| || || || |||||||| |||| || | Sbjct 117183171 ACCACCACGAAGCCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGA 117183112 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || ||||| || ||| | || || | ||||| || ||||| Sbjct 117183111 CAAAGTACATCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 117183052 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || | Sbjct 117183051 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAGC 117182992 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| | | | ||||| |||||||| |||||||| Sbjct 117182991 CTCAAGGGTGATGGTCTTCTCCATAAGGGTTTTCACGAAAATCTGCATTTT 117182941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499367191103560