Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pan_20troglodytes_20[refseq_20GCF_5F000001515.7_202016-05-03] 44,449 sequences; 3,231,170,666 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1056 89.7 5e-13 >seq1056 Length=137163284 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || ||||| || | ||||| | |||||||| || ||||||||||| || Sbjct 128406311 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTT 128406370 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||| || ||| ||||| || | || | |||||| | |||||| || || || | Sbjct 128406371 GTCTTGGATCTTTGCTTTGA-CGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGA 128406429 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || || || || ||||| ||||||||| Sbjct 128406430 TGGTCTTGCCAGTGAGTGTCTTCACAAAGATTTGCATC 128406467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || || ||||| || || || | ||| ||| || Sbjct 128406941 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 128407000 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || | ||||| | |||||||| || ||||||||||| || ||||| Sbjct 128407001 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 128407060 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| ||||| || | || | |||||| | |||||| || || || | || | Sbjct 128407061 GATCTTTGCTTTGA-CGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 128407119 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || || || || || ||||||||| Sbjct 128407120 TGCCAGTGAGTGTCTTCACGAAGATTTGCATC 128407151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || || ||||| || || || | ||| ||| || Sbjct 128407851 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 128407910 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || | ||||| | |||||||| || ||||||||||| || ||||| Sbjct 128407911 CAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 128407970 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| ||||| || | || | |||||| | |||||| || || || | |||| Sbjct 128407971 GATCTTTGCTTTGA-CGTTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTT 128408029 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || || || || || || |||||| Sbjct 128408030 TGCCAGTGAGTGTCTTCACGAAGATCTGCATC 128408061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451752061372040